Query= MSMg01no165_c13.b1 MSMg01no165_c13.b1 CHROMAT_FILE:
MSMg01no165_c13.b1 PHD_FILE: MSMg01no165_c13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:33:13 2005
(419 letters)
>mm_chr4_44798145_44798962
Length = 818
Score = 770 bits (398), Expect = 0.0
Identities = 413/418 (98%), Gaps = 1/418 (0%)
Strand = Plus / Minus
Query: 1 aacttggaagacctagttatcactaagtaaattatataattatcatcttagtgtttatat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 aacttggaagacctagttatcactaagtaaattatataattatcatcttagtgtttatat 408
Query: 61 ttatatttcttccaatatccagtgtaaccagaaattcaaagtgtagtaactgtcatctca 120
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 407 ttatatttcttccaatatccagtgtaactagaaattcaaagtgtagtaactgtcatctca 348
Query: 121 gaaagccagaaagggaaaaataattgcaaaatggtgagggtataaactaccatgtgaaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 gaaagccagaaagggaaaaataattgcaaaatggtgagggtataaactaccatgtgaaga 288
Query: 181 acaaatagatgaggtaaacaatattttaatttttacatgtactctatcctcaaaaacaca 240
||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 287 acaaatagatgaggt-aacaatattttaatttttacatgtactctaccctcaaaaacaca 229
Query: 241 gaggtgagttcatcactgcttgtaagcatgagttcatctctgaaacccacatgaaagttg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 gaggtgagttcatcactgcttgtaagcatgagttcatctctgaaacccacatgaaagttg 169
Query: 301 aaagaaacaacctactcattgagttgtcctctgacttccacatacacgagcaatccccca 360
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct: 168 aaagaaacaacctactcattgagttgtcctctgacttccacatacacaagcaatctccca 109
Query: 361 tcacagacacatacacacaatcttatacacatgcatgcaatttaataagtacaatatt 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108 tcacagacacatacacacaatcttatacacatgcatgcaatttaataagtacaatatt 51
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 818
Length adjustment: 9
Effective length of query: 410
Effective length of database: 809
Effective search space: 331690
Effective search space used: 331690
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no165_c13.g1 MSMg01no165_c13.g1 CHROMAT_FILE:
MSMg01no165_c13.g1 PHD_FILE: MSMg01no165_c13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:33:13 2005
(679 letters)
>mm_chr4_44643603_44644681
Length = 1079
Score = 1191 bits (616), Expect = 0.0
Identities = 664/680 (97%), Gaps = 2/680 (0%)
Strand = Plus / Plus
Query: 1 agagcactgtgcaaggggtgagggtaaatactatctcaacaca-tttttcataataaaag 59
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 201 agagcactgtgcaaggggtgagggtaaatactatctcaacacattttttcataataaaag 260
Query: 60 tccctgcatgataaaagacagagaaagcagagggacaaacaagtcccagagtctattcga 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tccctgcatgataaaagacagagaaagcagagggacaaacaagtcccagagtctattcga 320
Query: 120 cactgtcaactttgttaactctgtcccgtccatcactcacttcccactgtccaggaaagg 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 321 cactgtcaactttgttaactctgtcccgtccatcactcacttcccactgtccagtaaagg 380
Query: 180 ctgaagggagctcacatcatgaaaaaaaaaatacagagaggcatagagcgaaaaaggaaa 239
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct: 381 ctgaagggagctcacatcatg-aaaaaaaaatacagagaggcatagagggaaaaaggaaa 439
Query: 240 gcccaaagcagagcctaaaatgggaccaaggagccagtgagatgactcaatgggtaaagg 299
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 440 gcccaaagcagagcctaaaatgggaccaaggagccagtgagatgactcaacaggtaaagg 499
Query: 300 cacccacttgttaccaagcctgacaacctaagttggatagccaggacccacatagtagag 359
||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 500 cacccacttattaccaagcctgacaacctaagttggatagccaggattcacatggtagag 559
Query: 360 agaacagactcctgcatcttgtcctctgacctccacatgtgcacacagacaagataaata 419
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 agaacagactcctgtatcttgtcctctgacctccacatgtgcacacagacaagataaata 619
Query: 420 cggtgtaattttaaagtgagaccaataataaccacagccagcgatgaacacacacagcat 479
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 620 tggtgtaattttaaagtgagaccaataataaccatagccagcgatgaacacacacagcat 679
Query: 480 ggtatacatagtctctatttcatacagattctcagccaaacctcacacacctaaagaaag 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ggtatacatagtctctatttcatacagattctcagccaaacctcacacacctaaagaaag 739
Query: 540 ctagctctcgttatgtcccttttgtagacagacagagacttagctcacaatctgtcttag 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 ctagctctcgttatgtcccttttgtagacagacagagacttagctcacaatctgtcttag 799
Query: 600 gttacttaacacatccaagatcctgtagttggtttttggagctaggatggagcccacact 659
| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct: 800 gctacttaacacatccaagatcctgcagttggtttttggagctgggatggagcccacact 859
Query: 660 ctcaatggtcccactcccca 679
||||||||||||||||||||
Sbjct: 860 ctcaatggtcccactcccca 879
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1079
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1069
Effective search space: 715161
Effective search space used: 715161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
