BAC Information

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BAC

Clone NameMSMg01-165F16
Chromosome4 (Build37)
Map Location 132,149,682 - 132,150,141
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039799, Ptpru, Mecr, Sfrs4, EG664865, EG623230, Epb4.1, LOC666480, LOC100039835, Oprd1, LOC664894, Ythdf2, LOC664903, Gmeb1, Rnu11, Taf12, 9530096D07Rik, LOC100039864, Trspap1, Rcc1, Snhg3, Phactr4, Med18, Sesn2, Atpif1, Dnajc8, Ptafr
Downstream geneEya3, Xkr8, Smpdl3b, Rpa2, BC013712, LOC100039917, Ppp1r8, Stx12, OTTMUSG00000010099, BC008163, Fgr, Ahdc1, LOC100041932, Wasf2, Gpr3, Cd164l2, Fcnc-ps, Map3k6, Sytl1, D4Ertd196e, LOC100041990, LOC100042018, Wdtc1, Slc9a1, 4732473B16Rik, 2300002D11Rik, 1810019J16Rik, Nudc, Nr0b2, Gpatch3, Atpbd1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-165F16.T7 (MSMg01no165_f16.b1)MSMg01-165F16.TJ (MSMg01no165_f16.g1)
ACCAG363541AG363542
length726726
length of high quality
(start - end)
557 (37 - 593)463 (67 - 529)
definitionCHROMAT_FILE: MSMg01no165_f16.b1 PHD_FILE: MSMg01no165_f16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:33:29 2005CHROMAT_FILE: MSMg01no165_f16.g1 PHD_FILE: MSMg01no165_f16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:33:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGGT
CATGTCCCTAGCAGTGAGTTTTTGCCATATCGCTTTGTGCTCCTGCTGGA
TCACACACACGCAGGAGCTATTTGGATCCTCGAATGAAAGACACACGCAC
ACACATCAGCTTATTTTTTTTTTTTTAACAGATCTTGCCTGAGTTTATTT
GTAAGAACAGCATAGGACACTGGTCATCTGCAAATAGTGTGTGGGGAGGT
GTGTCACAGCAGTCCGTCTGTCTTCACACTGGCAGGAGCCTTTTCTATGG
GGCCTTCACAGGGGCCTGGGCACCTTTGGGGGCCTGAGCACCTTTGGGAG
CCTGGGCTGGAGCTGAAGCCTGGGCCTTAGCTGGAGCTTTGGCCCCTGCC
TTGGCCTGGACCTTAGGCTTCGGTTGGCAGAGCCTCTGACCCTTGGCCAT
GTAGCTTCGAATCCGCTTCCCAAGCTTAGGGTGAGCGATGAAAGCCAGCC
GCTTGAGTTTGGGGCCTTTTGGCATCTTGGGCTTGATGGCCTGAGGCTTC
ACCAGGGCCTTGATGGCCTCTGCGCGTGTACTCGCTGCCTTTGCTTTGTT
GGCCTGCATCTTCTTCAGGCCTTTCTTTGTGCGCTTCTTGGTAAAGTGCA
TGTTCCTCATGAACTTGGGTGCAACCCCCTTAAGAGATTCGTATCTTTGC
GACCGGGTTTTCTTGTAGCCATTTCG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCTCAGCTACCCACAGTCTCTTGTTGGGAGCTGT
CATGAGAGGCAGGGCAACGAAGAGGAGGGTTCAGAATCCACGTAACCTGG
GACAGACAGCTTAACTTTATGAGCCCAGTGTGTCTGTCTGAACATTAGAT
TAAAGGTCTCAAACCTCAGAGAACTCCCATGGAAAAGCACTTAGCCATGC
TTCCACATTCCACAGCCTTCACCTGCCTCCATCCACAACAAATTCTGGAC
TTCTCTCAGCTTCTCCTGGTCTTGACTTTTCCCAAGACAAAGAAATTTGA
CAAGAAAACCCTGCCAGGATCAAATCAAATGCAAAGCTTTTTCCCTGATT
GTTTTTTTTTAATTTAATTTAATTTTATTTTATTTTTCTTCTCCCCATTT
TACACGGAGAGAAACTGAGTCTTACCCACCACTAATGATCTTCTCTCCTT
CCCTCTCTCCTTTCCTTTCTCCCCATGTGCCAGGTGAGCACTGTATCACT
GAACCACATCTCCAACCCCTTAGGAGTTTTGTTTAGTTCTTGTTCTTAAG
ATTTATTTATTAAAGTGTCTATGAATGAAAGAGAGACAGAGACAGAGAGA
CTGAGACAGACGGAGAGCTTATTTGTGTGTGAGAGAGAACTATGCACTCA
CACGGATGCCGGATCCTTCACAAGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no165_f16.g1 MSMg01no165_f16.g1 CHROMAT_FILE:
MSMg01no165_f16.g1 PHD_FILE: MSMg01no165_f16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:33:29 2005
         (463 letters)



>mm_chr4_132149601_132150463
          Length = 863

 Score =  833 bits (431), Expect = 0.0
 Identities = 454/463 (98%), Gaps = 3/463 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctcagctacccacagtctcttgttgggagctgtcatgagaggcagggcaacgaagagga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tctcagctacccacagtctcttgttgggagctgtcatgagaggcagggcaacgaagagga 482

                                                                       
Query: 61  gggttcagaatccacgtaacctgggacagacagcttaactttatgagcccagtgtgtctg 120
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gggtttagaatccacgtaacctgggacagacagcttaactttatgagcccagtgtgtctg 422

                                                                       
Query: 121 tctgaacattagattaaaggtctcaaacctcagagaactcccatggaaaagcacttagcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 421 tctgaacattagattaaaggtctcaaacctcagagaactcccatggaaaagcacttaacc 362

                                                                       
Query: 181 atgcttccacattccacagccttcacctgcctccatccacaacaaattctggacttctct 240
           |||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||||
Sbjct: 361 atgcttccacattccacagccttcccctgccactatccacaacaaattctggacttctct 302

                                                                       
Query: 241 cagcttctcctggtcttgacttttcccaagacaaagaaatttgacaagaaaaccctgcca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 cagcttctcctggtcttgacttttcccaagacaaagaaatttgacaagaaaaccctgcca 242

                                                                       
Query: 301 ggatcaaatcaaatgcaaagctttttccctgattgtttttttttaatttaatttaatttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ggatcaaatcaaatgcaaagctttttccctgattgtttttttttaatttaatttaatttt 182

                                                                       
Query: 361 attttatttttcttctccccattttacacggagagaaactgagtcttacccaccactaat 420
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 181 attttatttttcttctccccattttacactgagagaaactgagtcttacccaccactaat 122

                                                      
Query: 421 gatcttctctccttccctctctcctttcctttctccccatgtg 463
           ||   ||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ga---tctctccttccctctctcctttcctttctccccatgtg 82


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 863
Length adjustment: 10
Effective length of query: 453
Effective length of database: 853
Effective search space:   386409
Effective search space used:   386409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)