Query= MSMg01no165_l20.b1 MSMg01no165_l20.b1 CHROMAT_FILE:
MSMg01no165_l20.b1 PHD_FILE: MSMg01no165_l20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:34:01 2005
(621 letters)
>mm_chr4_126359145_126360166
Length = 1022
Score = 1125 bits (582), Expect = 0.0
Identities = 609/618 (98%), Gaps = 1/618 (0%)
Strand = Plus / Minus
Query: 5 gaattctacagttatagcaccttctcaagaaagaag-aaaaaatatcagctgagaaccca 63
|||||||||||||| || |||||||||||||||||| |||||||||||||||||||||||
Sbjct: 822 gaattctacagttaaagaaccttctcaagaaagaagaaaaaaatatcagctgagaaccca 763
Query: 64 aattaatgtaaaaagtaaaccagctgcatatcaaaagaaaaaaagaaaactggttgccaa 123
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 762 aattaatgtataaagtaaaccagcttcatatcaaaagaaaaaaagaaaactggttgccaa 703
Query: 124 agcagacactttaaagaatgtactaacagtgaactatctaagtaactaatgaaaaccgta 183
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 702 agcagacactttaaagaatgtgctaacagtgaactatctaagtaactaatgaaaaccgta 643
Query: 184 atgctgtagccttatctagctaaagcagacttactccgattaaacagacagatactcagg 243
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 642 atgctgtagccttatctagctaaagcagacgtactccgattaaacagacagatactcagg 583
Query: 244 ttgtaattgttgcctggggaggaaacgcagtatttagtttgcagcttcagagaaaagctt 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 ttgtaattgttgcctggggaggaaacgcagtatttagtttgcagcttcagagaaaagctt 523
Query: 304 tattcttcctatcttacccgactttcacttttcatttttctaatagtgctgaataatctc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tattcttcctatcttacccgactttcacttttcatttttctaatagtgctgaataatctc 463
Query: 364 ccctgggagacatgttttcctgtatgaaagcttctgaaatgtcaaaatctcttaatagga 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ccctgggagacatgttttcctgtatgaaagcttctgaaatgtcaaaatctcttaatagga 403
Query: 424 tttaaggaacaaatgcaactaccaagtactttgcaagtgttggagagttgtagatagtaa 483
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 402 tttaaggaacaaatgcaactaccaagtactctacaagtgttggagagttgtagatagtaa 343
Query: 484 taatgtgggtgtctggcctggtggtggctcccacataaaacacgcctatagatagataat 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 taatgtgggtgtctggcctggtggtggctcccacataaaacacgcctatagatagataat 283
Query: 544 gttgaattgccttaaaattcccaagtaaacaaattttcatgttacacattcaaagactgt 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 gttgaattgccttaaaattcccaagtaaacaaattttcatgttacacattcaaagactgt 223
Query: 604 tagtttgcaaaattgttc 621
||||||||||||||||||
Sbjct: 222 tagtttgcaaaattgttc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1022
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1012
Effective search space: 618332
Effective search space used: 618332
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no165_l20.g1 MSMg01no165_l20.g1 CHROMAT_FILE:
MSMg01no165_l20.g1 PHD_FILE: MSMg01no165_l20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:34:01 2005
(580 letters)
>mm_chr4_126193377_126194356
Length = 980
Score = 1025 bits (530), Expect = 0.0
Identities = 572/592 (96%), Gaps = 12/592 (2%)
Strand = Plus / Plus
Query: 1 tcatgcagataatagagatttctccacatacacaaaaagtttaaaaaaatacagaataag 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 189 tcatgcagataatagagatttctccacatacacaaaaagttttaaaaaatacagaataag 248
Query: 61 agttacaagaatatggcaacaatttaatcataaagaggcaaaacatctaagctaagtaag 120
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct: 249 agttacaagaatatggcaacaatttaatcataaagaggcaaaacgtctaagctaactaag 308
Query: 121 ttaaattaggccccagatggactaagatgttcaaccattt----------ttt-ttt-tt 168
|||||||||||||||||||| ||||||||||||||||||| ||| ||| ||
Sbjct: 309 ttaaattaggccccagatggtctaagatgttcaaccattttatttatttatttatttatt 368
Query: 169 gagtcagggtctctacatagctcagattagccttgatcttgtgatgttccggccacaggc 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 gagtcagggtctctacatagctcagattagccttgatcttgtgatgttccggccacaggc 428
Query: 229 tcctgactgctgagattccaggcatgcaataccaggtctggctacataactgacctctaa 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 tcctgactgctgagattccaggcatgcaataccaggtctggctacataactgacctctaa 488
Query: 289 ttcactcattcagtaagtttgtatacgtatcaatacgttctggtgtgtattttcaagtct 348
||||||||||||||||||||||||| ||||||||| ||||| ||||||||||||||||||
Sbjct: 489 ttcactcattcagtaagtttgtataagtatcaatatgttctagtgtgtattttcaagtct 548
Query: 349 aagtgtacactgactaccacagctaaagaacttatcccaattcccactgctaggacgacg 408
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 aagtgtacactgactaacacagctaaagaacttatcccaattcccactgctaggacgacg 608
Query: 409 taggctaggaagagaacccaggtctgtggggctcaggcccagatgacacgtactgtgtta 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 taggctaggaagagaacccaggtctgtggggctcaggcccagatgacacgtactgtgtta 668
Query: 469 cactcaagtcacgatgacattatcatgaatacctacccctaatttctttggtaaacttga 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 cactcaagtcacgatgacattatcatgaatacctacccctaatttctttggtaaacttga 728
Query: 529 cacgctgggagtctgttagaggttttgtctgctcattgatgttctgaatgtc 580
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 cacgctgggagtctgttagaggttttgtctgctcattgatgttctgaatgtc 780
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 980
Length adjustment: 10
Effective length of query: 570
Effective length of database: 970
Effective search space: 552900
Effective search space used: 552900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
