BAC Information

Click to search

BAC

Clone NameMSMg01-166E14
Chromosome4 (Build37)
Map Location 62,365,614 - 62,366,216
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039247, LOC667278, Mup5, LOC435785, LOC667295, LOC100039305, LOC546832, OTTMUSG00000007485, Mup3, LOC100039345, OTTMUSG00000000231, Zfp37, Slc31a2, Fkbp15, Slc31a1, Cdc26, Prpf4, Rnf183, Wdr31, Bspry, Hdhd3, Alad, Pole3, 4933430I17Rik, Rgs3
Downstream geneZfp618, Ambp, Kif12, Col27a1, Orm1, Orm-ps, Orm3, Orm2, Akna, Whrn, Atp6v1g1, 6330416G13Rik, LOC670833, 1700018C11Rik, LOC667451
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-166E14.T7 (MSMg01no166_e14.b1)MSMg01-166E14.TJ (MSMg01no166_e14.g1)
ACCAG364156AG364157
length987740
length of high quality
(start - end)
---606 (77 - 682)
definitionCHROMAT_FILE: MSMg01no166_e14.b1 PHD_FILE: MSMg01no166_e14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:34:44 2005CHROMAT_FILE: MSMg01no166_e14.g1 PHD_FILE: MSMg01no166_e14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:34:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AGTCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA
AGGATCCGCNGGGAATTCTGTAGGTCCAGAAAGGCTATCGAACTTTGGGG
GAAAGGTTGAATAGTCTATGTGATTGAATCTGGACACTCATCTAAGCGAC
GAGAACTCATGGAAAGGTGGATAAATATCACATAAGGCACGCCGTAAAGG
ACACTAAAGTACTGGGTTTTTGCAATTTCTCNNTCTCTACTCTGCTCGTC
TGCGTCTCTCTCTCGCCTCCACTCGCACTCGCCGCCTCTTCTGCCTTTCG
CATCAATACTCTCGCCAGACTCTCTATTATGGTCACCAATTTAGTCAAAT
TTCTTTGACTCTCCACATGTAACAAGCGCATATGCATGTATCATGTAGTA
GTGACACGTTTTCTTTTTTGTGTCCCTTATTCATCCAACGGACGACAAAC
CCCAGAAAGATTTTTGAGGTGGCCCTCTTAGAAGACAGAGGAGCCCCAAN
ATGNTGATAGAAGTGTTTGAGTTTGTTTTTTTTCTCCCCCCCAAAAATTT
CATTTTAAAAAAAGTGGCGGGGGGGGGTGGGGGGTGATTCTTTCCTCCTT
TGTATAAACATATTAAGTTTGTTTTTAAAATTATTTATCTTGAAAAACAC
AGCGCCACGGTATCATAAATATAACAATAGGCCTGTGTATTATAATATCA
CCTACCCCTTTAGACATATATTAAATCTATTATATATTGCCGCAAATGAC
CGCCGCTTTTTTTTAACGCCCTTATTCATTTAACACGTCACATCCGTCCC
CTCCCTGCTCTTTTTTATTTACCCTCTCCGCCTCTCTCTATCCTTTCGTT
CACAGTTCACCGACGTCTTTTTTTAATTCTCGTTGCACATATTTTTAATA
CCAGCGCACTCTCTCAATATGAACATGATTAGCTATACTATAAGTGAATC
CATCCCCACACAGTGATATTTATACTTATTCATACCT
CAATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATCTGCCTGACTCTGTTCTCCAG
GACTTTGGTTTCCATGGCAACTTGGGGTTTGGAAGGTAGAGGGGTCTGGC
TCATGGCTATATCCCCGAAACCCCCCAAAAAAGAAGACAGTGATTCTCTG
GGTGTGGCCAGTCACTTTTCCAAGCACAAGACGTCGTCACGGGAGAGTCA
GGCCAGGGTGGACATCCTAAGCTCTGATCTAGCTCTGCTTTGAACCACTT
GGAGAAACAAGAAGTGGCTTGGCAATCCTCCCTAGACCTCAGGTGTCAGG
TCCTCCAGCTCAGGCCTGGAAGAAGCCTGAGAAATGTCCTTGCTCTCAAC
TAGAAACACAGCTCTGCTTCCCAAATGTTCAGCCCTAATGAGGGTCCACG
GTGGGAAAGGCCTTTACTGTTTACAAAGCCAAATGGGCTCACTTGCTAGG
CCTACTGCTAGGTTTCCGGGGCCTGGGGAAGCAAGACTCAGCACTCTCCT
GGGGGCAGCAAAATGACTTCCAACCTATATGGAGTCCCTGCTCCATGCCT
GGTCCAGGGCAAGTCCTTCGTATGCATTGGCTCACTGGGCCTTCATCCCA
GAGCTAAGTACACGACGTCTTCCCTATCGTAAGGCTCGGGGCCCCATAGC
GACAGGCCAGCATTAGAGCAAGTCAGTAGCGTCCACAGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no166_e14.g1 MSMg01no166_e14.g1 CHROMAT_FILE:
MSMg01no166_e14.g1 PHD_FILE: MSMg01no166_e14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:34:44 2005
         (606 letters)



>mm_chr4_62365414_62366420
          Length = 1007

 Score = 1143 bits (591), Expect = 0.0
 Identities = 600/603 (99%), Gaps = 1/603 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   catctgcctgactctgttctccaggactttggtttccatggcaacttggggtttggaagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 catctgcctgactctgttctccaggactttggtttccatggcaacttggggtttggaagg 744

                                                                       
Query: 61  tagaggggtctggctcatggctatatccccgaaaccccccaaaaaagaagacagtgattc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 tagaggggtctggctcatggctatatccccgaaaccccccaaaaaagaagacagtgattc 684

                                                                       
Query: 121 tctgggtgtggccagtcacttttccaagcacaagacgtcgtcacgggagagtcaggccag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 tctgggtgtggccagtcacttttccaagcacaagacgtcgtcacgggagagtcaggccag 624

                                                                       
Query: 181 ggtggacatcctaagctctgatctagctctgctttgaaccacttggagaaacaagaagtg 240
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 623 ggtggacatcctaagctctgatctagctctgctttgaaccacttgaagaaacaagaagtg 564

                                                                       
Query: 241 gcttggcaatcctccctagacctcaggtgtcaggtcctccagctcaggcctggaagaagc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 gcttggcaatcctccctagacctcaggtgtcaggtcctccagctcaggcctggaagaagc 504

                                                                       
Query: 301 ctgagaaatgtccttgctctcaactagaaacacagctctgcttcccaaatgttcagccct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ctgagaaatgtccttgctctcaactagaaacacagctctgcttcccaaatgttcagccct 444

                                                                       
Query: 361 aatgagggtccacggtgggaaaggcctttactgtttacaaagccaaatgggctcacttgc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 aatgagggtccacggtgggaaaggcctttactgtttacaaagccaaatgggctcacttgc 384

                                                                       
Query: 421 taggcctactgctaggtttccggggcctggggaagcaagactcagcactctcctgggggc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 taggcctactgctaggtttccggggcctggggaagcaagactcagcactctcctgggggc 324

                                                                       
Query: 481 agcaaaatgacttccaacctatatggagtccctgctccatgcctggtccagggcaagtcc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 agcaaaatgacttccaacctatatggagtccctgctccatgcctggtccagggcaagtcc 264

                                                                       
Query: 541 ttcgtatgcattggctcactgggccttcat-cccagagctaagtacacgacgtcttccct 599
           || ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 263 tttgtatgcattggctcactgggccttcatccccagagctaagtacacgacgtcttccct 204

              
Query: 600 atc 602
           |||
Sbjct: 203 atc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1007
Length adjustment: 10
Effective length of query: 596
Effective length of database: 997
Effective search space:   594212
Effective search space used:   594212
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)