BAC Information

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BAC

Clone NameMSMg01-166J07
Chromosome4 (Build37)
Map Location 149,934,703 - 149,935,015
singlet/doubletsinglet
Overlap geneRere
Upstream geneCtnnbip1, Clstn1, Pik3cd, D4Ertd429e, Slc25a33, Spsb1, H6pd, Gpr157, Slc2a5, LOC435818, Car6, LOC100041882, Eno1, LOC666880, LOC384091
Downstream geneSlc45a1, LOC677027, Errfi1, Park7, Tnfrsf9, Uts2, Per3, Vamp3, Camta1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-166J07.T7 (MSMg01no166_j07.b1)MSMg01-166J07.TJ (MSMg01no166_j07.g1)
ACCAG364366AG364367
length878782
length of high quality
(start - end)
57 (50 - 106)321 (78 - 398)
definitionCHROMAT_FILE: MSMg01no166_j07.b1 PHD_FILE: MSMg01no166_j07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:35:07 2005CHROMAT_FILE: MSMg01no166_j07.g1 PHD_FILE: MSMg01no166_j07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:35:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCTAGATATAGAGGTGTTAGTGGGATTAGGAAAGTTATTTTT
ATTTGGNATNCNCTTTTTTTTTCTTCCGCCACACATTTTGAACCACCTTT
TGTTNTCCCACCTTATTTTANACCCNCCATCATATGATTAAATCTATTTT
ATTTATTTTTTTTGATACCTTTTATAGATAAAATTAATATTGAATATATA
AAATTAAGTTTTTCGGTTTTCATTTGTTGTTTTGTGAACTCCCTATTATA
TGTACTATATTATTTAATATATATAAAACATTTGGTTGTTGGTGTGTTTT
TTTTTTTTTTTTATTTTGTTGTGGAGAGAAGGAAAAAAATAAAAATTTTG
GATAAATTCCCCAAACAAAACCCCTTTTATTTTTTTTTTTTATATAATAT
TAGGTGGGGGGCCCCCTGGTGGTAAAAAAAAAAAAAAAAAATTTGGGGGG
GGGGGGGGGTGGATTGTGCTGTAAGTATTGGTATATATCGGTTGTTTGTC
TTTTGTTATCATCTCGTCTCATTTTGCTACGCTCATATAAAATAATTTTT
TGGTGTTATTACGATTATTAATATTATGCTTATCATTATATTTATTGAGT
TGTGTGTGACTGCGATGTTTTCGTAGTGGTTGTTATTCCTTTCATAGTTA
TGTGTGTTTTATCTTCCGCCGGGCGTCGGGGGGAGAGGGCCCTTCTTGTT
CTTGTTTTTTTTAATTTATATATAAACACCCCGAAGACACTGCTGATAAG
TGAGTTTGATCGTGTGTATTGATGATTATACTAAACAACCAAAATAATCT
CTAGTTTACTCGCTGGGTTTTGTTTTTN
NNCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCAAACCCACAGCCCATATGACTG
TGCACAACCACACTTCTCACACTAGGTCTCTGAGCTGCTCTTCACTCAAT
TCTCCCCCCTCAGAAATTAAGGGAGGACATTTTTCCCCCCCTTCGAGACA
GGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAG
GCTGGCCTCGAACTCAGAAATCCCCTTGCCTCTGCCTCCCAAGTGCTGGG
ATTAAAGGCGTGCGCCACCACCGCCTGTCTGGGAGGGCATATTTCTAATG
CTGTTTTCAGGGTAGTTTTGTTTGCCTGTGATTGTTAGGAGTGATTTGAC
TTATGTTTATTTTTTTTTTCCCCCCCCTTTTTTAAAAAAATGTTAGTTTA
TTTTTGTTTTGTATCCCCTCGCGACGTTATTTGCATTATTTTCCTCCCCC
TTCCTTTATTTATCTTATGCTCCCTTTCCCCTCTCTTTGTTTCCCCTCTG
CATTATTTTTTCCCCCTATAAATAAATGAAAGCAATATTAAATTACACCT
CTTATATTAATCTTATATAATACACCCTCATATGTGTTTAATGCTTTTAA
TTTCCTTCTCCTTTTTTATATTTCTACGTCTTCCTACATACCCTACCTCT
TTTTGTTGCCTCTAACTCCTTTAATTTTAATCTCCCATCCGTGTTTTTTC
TCTTTTCCTTGCTCTCCTCGTTTCCAACATTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no166_j07.g1 MSMg01no166_j07.g1 CHROMAT_FILE:
MSMg01no166_j07.g1 PHD_FILE: MSMg01no166_j07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:07 2005
         (321 letters)



>mm_chr4_149934703_149935422
          Length = 720

 Score =  547 bits (283), Expect = e-160
 Identities = 304/315 (96%), Gaps = 8/315 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaacccacagcccatatgactgtgcacaaccacacttctcacactaggtctctgagctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 caaacccacagcccatatgactgtgcacaaccacacttctcacactaggtctctgagctg 254

                                                                       
Query: 61  ctcttcactcaattctcccccctcagaaattaagggaggacatttttccc------cccc 114
           ||||||||||||||||||||||||||||||||||||||||||  ||||||      ||||
Sbjct: 253 ctcttcactcaattctcccccctcagaaattaagggaggaca--tttcccccccctcccc 196

                                                                       
Query: 115 ttcgagacagggtttctctgtgtagccctggctgtcctggaactcactttgtagaccagg 174
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 ttcgagacagggtttctctgtgtagccctggctgtcctggaactcactttgtagaccagg 136

                                                                       
Query: 175 ctggcctcgaactcagaaatccccttgcctctgcctcccaagtgctgggattaaaggcgt 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 ctggcctcgaactcagaaatccccttgcctctgcctcccaagtgctgggattaaaggcgt 76

                                                                       
Query: 235 gcgccaccaccgcctgtctgggagggcatatttctaatgctgttttcagggtagttttgt 294
           |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75  gcgccaccaccgcccggctgggagggcatatttctaatgctgttttcagggtagttttgt 16

                          
Query: 295 ttgcctgtgattgtt 309
           ||| |||||||||||
Sbjct: 15  ttgtctgtgattgtt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 720
Length adjustment: 9
Effective length of query: 312
Effective length of database: 711
Effective search space:   221832
Effective search space used:   221832
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)