BAC Information

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BAC

Clone NameMSMg01-166L15
Chromosome4 (Build37)
Map Location 32,684,740 - 32,684,869
singlet/doubletsinglet
Overlap genenone
Upstream geneMap3k7, LOC665218, LOC665228, LOC665232, Bach2
Downstream geneGja10, Casp8ap2, Mdn1, Lyrm2, Ankrd6, LOC665298, Rragd, 4933421O10Rik, Ube2j1, LOC100039142, Gabrr2, Gabrr1, Acy1l2, Srrp, Pnrc1, Rngtt
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-166L15.T7 (MSMg01no166_l15.b1)MSMg01-166L15.TJ (MSMg01no166_l15.g1)
ACCAG364461
length728781
length of high quality
(start - end)
---140 (79 - 218)
definitionCHROMAT_FILE: MSMg01no166_l15.b1 PHD_FILE: MSMg01no166_l15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:35:19 2005CHROMAT_FILE: MSMg01no166_l15.g1 PHD_FILE: MSMg01no166_l15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:35:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAATATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTATGAAATAAA
AAACACCAGCCCTGTCAAGAATAAAACTTATCCTTCTTTTCTTTCTAACT
ACCCCCCTTGGTTTTTTACTCCTATTTT
NCCCCGATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTGGAAAGAGCACTGAACCATCT
TTCTGGCCCTCAATGGGAACACTCTATATTTGAATTACTTTCTGTATATA
CTGAGGATTTGGGCACCAGATGTATAAACGGAGGATATAACCACTCCAAG
GTATGATTGGGGGGGGGTCCCNTNTTTNTTTTTCCTCTTTTTTTTTCCCC
CCCCTTTTTTCTTTTATCCATCCCCCACACCCTTCTTTTNATATCAAAAT
CAACNACCCCCCCCCCCCATTTTTTTTTTTTTCACAATATCTTCGTCTTT
TTTGTTCCTTTTTTTTCTTCCCCCCCCTTTCCATTTTTCTCTATATCTTT
ATTTGTTTGTTATTAACGGNNCCTTGCCCCCAAAAAAAAAAAATTAAAAT
ATATTTTTTTACTCCCCCCTTTTTTTCTTTATTGTATATAATTCAATTCC
ACTCATAATAATTCCATATCTCCCCCTTTCCCCCTCTCTTTTTGTCCTCC
GCTAACCTTTCTTTCTTTCCATTTTCTATATCAACTCTCTTCTGTTTTTT
TTCTCCATTTTTTATTTTCGATTATCTTACATTCTTTTCTTTTTTTATGC
CATTTCTAATTCTCCCTCTTATAATTATTTATATCTCTCTACCCATTCTC
TTATTTTTTCGTATCTACAAAAACCTTTTTCTTCTCCCCCTCCCTTACCA
TTTTTCTTATTTCTGCCGTCTTCCACCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no166_l15.g1 MSMg01no166_l15.g1 CHROMAT_FILE:
MSMg01no166_l15.g1 PHD_FILE: MSMg01no166_l15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:19 2005
         (140 letters)



>mm_chr4_32684531_32685070
          Length = 540

 Score =  252 bits (130), Expect = 9e-72
 Identities = 130/130 (100%)
 Strand = Plus / Minus

                                                                       
Query: 10  cactgaaccatctttctggccctcaatgggaacactctatatttgaattactttctgtat 69
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 cactgaaccatctttctggccctcaatgggaacactctatatttgaattactttctgtat 280

                                                                       
Query: 70  atactgaggatttgggcaccagatgtataaacggaggatataaccactccaaggtatgat 129
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 atactgaggatttgggcaccagatgtataaacggaggatataaccactccaaggtatgat 220

                     
Query: 130 tggggggggg 139
           ||||||||||
Sbjct: 219 tggggggggg 210


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 140
Length of database: 540
Length adjustment: 8
Effective length of query: 132
Effective length of database: 532
Effective search space:    70224
Effective search space used:    70224
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)