Query= MSMg01no166_n10.b1 MSMg01no166_n10.b1 CHROMAT_FILE:
MSMg01no166_n10.b1 PHD_FILE: MSMg01no166_n10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:27 2005
(490 letters)
>mm_chr4_13638285_13639174
Length = 890
Score = 855 bits (442), Expect = 0.0
Identities = 478/494 (96%), Gaps = 8/494 (1%)
Strand = Plus / Plus
Query: 1 aatatagaaagaacctgtctcaacaacaagcaggcaagcaaacaaacaaagaaaaataat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatatagaaagaacctgtctcaacaacaagcaggcaagcaaacaaacaaagaaaaataat 260
Query: 61 ctaaaaatataaaagaacagaattcatatctgtgttatcctacagtacacctccaacacc 120
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 261 ctaaaaatataaaagaacagaattcatatctgtgttatcctacagaacacctccaacacc 320
Query: 121 aaactctgtatctagcatagtgtaggaactcaatacctgatgtctaaaggggggggaaac 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 321 aaactctgtatctagcatagtgtaggaactcaatacctgatgtctaaagggggggggaac 380
Query: 181 cctaaattattatggacccacttgattttcaatatagatagttttaaaaaaagtgtagtt 240
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 381 cctaaattattatggacccacttgattttcaatatatatagttttaaaaaaagtgtagtt 440
Query: 241 ctcgttggtttatcatagctcactatttcctccatgtactatgtttttcagtgaaaaaaa 300
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 441 cttgttggtttatcatagctcactatttcctccatgtactatgtttttcagtgaaaaaca 500
Query: 301 atcttatacctagcaaggatagaacatgttgacaaaactctagctaccacccc----ttt 356
|||||||||||||||||||| ||||||||||||||||||||||||| | |||
Sbjct: 501 atcttatacctagcaaggatggaacatgttgacaaaactctagctagta----ggggttt 556
Query: 357 ggagaacataaagctattagcatgggctgtatctctgagggcttatgaaaacacataatc 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ggagaacataaagctattagcatgggctgtatctctgagggcttatgaaaacacataatc 616
Query: 417 atgttttctcacaggaaattaagaatactctaagggagctactcgttggtggagtgttcc 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 atgttttctcacaggaaattaagaatactctaagggagctactcgttggtggagtgttcc 676
Query: 477 ctcctcttccagag 490
||||||||||||||
Sbjct: 677 ctcctcttccagag 690
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 890
Length adjustment: 10
Effective length of query: 480
Effective length of database: 880
Effective search space: 422400
Effective search space used: 422400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no166_n10.g1 MSMg01no166_n10.g1 CHROMAT_FILE:
MSMg01no166_n10.g1 PHD_FILE: MSMg01no166_n10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:27 2005
(555 letters)
>mm_chr4_13772559_13773516
Length = 958
Score = 986 bits (510), Expect = 0.0
Identities = 535/550 (97%), Gaps = 13/550 (2%)
Strand = Plus / Minus
Query: 19 gaaaaggctactcagcacacttggttgtgtttagggacatgctgatctaactataggcca 78
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 958 gaaaaggctactcagcacacttggttgtgtttagggacatgctgatctaactataggcca 899
Query: 79 gtctgatgaaatatcttctcacaacttctaacttcaaatgacaggcataccaagagacta 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 898 gtctgatgaaatatcttctcacaacttctaacttcaaatgacaggcataccaagagacta 839
Query: 139 atagataattctgacactctccaatgtaatcaaataggaggcaattttacacatggtgaa 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838 atagataattctgacactctccaatgtaatcaaataggaggcaattttacacatggtgaa 779
Query: 199 atattaaaac----------cattctatttactatgagctgctttcacattagaaattca 248
|||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 atattaaaacccaaagacagcattctatttactatgagctgctttcacattagaaattca 719
Query: 249 ggctgttgctacttttatttcttttctttgatttgtatttactggggggaggggatagca 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ggctgttgctacttttatttcttttctttgatttgtatttactggggggaggggatagca 659
Query: 309 gtagaaaataaactacacttgcttactcccccaa-cat--ttcacactaaaaagaaatca 365
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 658 gtagaaaataaactacacttgcttactcccccaataatacttcacactaaaaagaaatca 599
Query: 366 ataatatacatctgaacatgactcaaggatttgatttgtaggagcttgaccatgtccatt 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ataatatacatctgaacatgactcaaggatttgatttgtaggagcttgaccatgtccatt 539
Query: 426 gattaatccatcagggagaaaagcattcgtgaatataggacatactagccgcctccatct 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gattaatccatcagggagaaaagcattcgtgaatataggacatactagccgcctccatct 479
Query: 486 ttgagcccaagagcctttgaaacagcaccctagagtgtcactgcaggtactggagctgtc 545
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 478 ttgagcccaagagcctttgaaacagcaccctagagtgtcactgcaggcactggagctgtc 419
Query: 546 tgcttgcacc 555
||||||||||
Sbjct: 418 tgcttgcacc 409
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 958
Length adjustment: 10
Effective length of query: 545
Effective length of database: 948
Effective search space: 516660
Effective search space used: 516660
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
