BAC Information

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BAC

Clone NameMSMg01-166O08
Chromosome4 (Build37)
Map Location 77,702,632 - 77,702,929
singlet/doubletsinglet
Overlap geneLOC100039974
Upstream genenone
Downstream geneLOC100039996
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-166O08.T7 (MSMg01no166_o08.b1)MSMg01-166O08.TJ (MSMg01no166_o08.g1)
ACCAG364575AG364576
length734729
length of high quality
(start - end)
305 (53 - 357)652 (78 - 729)
definitionCHROMAT_FILE: MSMg01no166_o08.b1 PHD_FILE: MSMg01no166_o08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:35:31 2005CHROMAT_FILE: MSMg01no166_o08.g1 PHD_FILE: MSMg01no166_o08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:35:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGGATATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTCTAGTGAGTCAGGGAGGTAAGAAAGTAGAATTAATTA
AATGGAACAGTGAATTACTCTTCTCCCAAGTATCAGAGCACCTGATATAG
TGTTTGCCTCATAACAGACCCTCAGACTGATATTTGCAAAGTTAATACAT
GTTTTACTATCTCAGCCATTTGAATCAAAATAGTGAGTCAAACAGGTTGT
TACGTTAAATGTGTGGTATTTGTTTTTAAATCAATTGTATGAATGTTTTA
TCTGAATGTATGCATGTACACAATATGTTTATCTGGTGCATGCAGAGGAC
AGGNCAGAGTTTAGATCCCCCCGAATCAAGCACCAGATTATTAAAAATTT
ATACACTGGTGACAGCCCCCAAAAAAAAAAAAAATTCCTAGCATAGCGAG
TGCTATTAACCACTGAGCCATTTTTACTGTCTCAAAAATAGCCTTAACAC
TTTTGACAAGTGGTTTATTATTCAGCACGAGCTGTGACACAATAGTAACC
ATTTAAACCTGCTGTTTCCCAATTTTTTTTATTCTCTTTCCCCCCCTCCT
TTTTTTCCCCTACCTCCCTTTTTTTCTTTCTTCTCTCCCTCCTTTTTCTC
TCCCCCCCTTTTTTTTCCCCCCCACCCTTTATAATTTCTTCCCCCTCAAT
TTCTCTCCCCCCGTTTTTTTTTTTATTAAACTCA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCAAAAGGTTAACAAGCTGAAGAG
CCTAAGTGATGACGATTCAGTCCCACTTTGTAGGGAGAAGAAAACAATCA
CAAAGTGTGGGGGGGGGGGCTGGGAGGGAAAGTGGACACGGGGTTGGGAG
GTGTGGCAAAGGGAAACATGATGTGATCTTGGGTGGGAGAAAAGAACTCA
TGCCTTAAGGGCCGGTAGAAAGAATGGAAACATGCAACTTCAGGATGTAG
GAGGTTGGGGGGGGGACCCCTCCAGAATGCACCAGAGACCTGGGAGGAGA
GACACTATCAGAACTCAAAGGGCAGGACCTTAGATGAAATGCCCACTTCA
AGCAGAAAGACAGGGCATCAAGTGGAGGACAGTGTTGCCATTCCACAGTC
AAAAGTCTGACCCATAATTGTTCCTATTTGAAATAATTGCAGGGATGGAG
ATGTCGAGAAGCCTGAGGAAAAGAAGGTCTAGCAACAGGCTCAAAGTGGG
ATCCATCTCAAGGGGAGGCCCCAAAGCCTGACACTATTACTGAGGCTATG
GAGTGCTCACAAAAGGGACCTATCATGACTGTTCTCCTAGAGACCCAATA
AGCAAATGAAAGAGTCAGAAGCAGCTATTTTCACCCAACCAATGGATAGA
CGCTACTGATCCCTGTGGGTGAATTAGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no166_o08.b1 MSMg01no166_o08.b1 CHROMAT_FILE:
MSMg01no166_o08.b1 PHD_FILE: MSMg01no166_o08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:31 2005
         (305 letters)



>mm_chr4_77702514_77703218
          Length = 705

 Score =  522 bits (270), Expect = e-153
 Identities = 291/298 (97%), Gaps = 1/298 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctagtgagtcagggaggtaagaaagtagaattaattaaatggaacagtgaatt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 gaattctctagtgagtcagggaggtaagaaagtagaattaattaaatggaacagtgaatt 357

                                                                       
Query: 65  actcttctcccaagtatcagagcacctgatatagtgtttgcctcataacagaccctcaga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 actcttctcccaagtatcagagcacctgatatagtgtttgcctcataacagaccctcaga 297

                                                                       
Query: 125 ctgatatttgcaaagttaatacatgttttactatctcagccatttgaatcaaaatagtga 184
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 296 ctgatatttgcaaagttaatacatgttttactatctcagccatttgaatcaacatagtga 237

                                                                       
Query: 185 gtcaaacaggttgttacgttaaatgtgtggtatttgttttt-aaatcaattgtatgaatg 243
           |||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 236 gtcaaacaggttgttatgttaaatgtgtggtattttttttttaaatcaattgtatgaatg 177

                                                                     
Query: 244 ttttatctgaatgtatgcatgtacacaatatgtttatctggtgcatgcagaggacagg 301
           |||||||||||||||||||| |||||||||||  ||||||||||||||||||||||||
Sbjct: 176 ttttatctgaatgtatgcatatacacaatatgcatatctggtgcatgcagaggacagg 119


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 305
Length of database: 705
Length adjustment: 9
Effective length of query: 296
Effective length of database: 696
Effective search space:   206016
Effective search space used:   206016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)