BAC Information

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BAC

Clone NameMSMg01-167I14
Chromosome4 (Build37)
Map Location 48,442,475 - 48,442,607
singlet/doubletsinglet
Overlap geneInvs
Upstream geneLOC666473, Alg2, Sec61b, LOC100040788, Nr4a3, Stx17, Txndc4
Downstream geneTex10, 5730528L13Rik, Tmeff1, 2310039E09Rik, E130309F12Rik, LOC666602, Rbpsuh-ps1, C730036D15Rik, LOC100040919, LOC666617
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-167I14.T7 (MSMg01no167_i14.b1)MSMg01-167I14.TJ (MSMg01no167_i14.g1)
ACCAG364983AG364984
length723670
length of high quality
(start - end)
403 (36 - 438)133 (75 - 207)
definitionCHROMAT_FILE: MSMg01no167_i14.b1 PHD_FILE: MSMg01no167_i14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:36:19 2005CHROMAT_FILE: MSMg01no167_i14.g1 PHD_FILE: MSMg01no167_i14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:36:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTCGG
GTCCCAACGCTGCATTCTACACCATTGCATACACTAGCAAGATTTTATTG
AAAGGACGCAGATGTAGCTGTCTCTTGTGAGACTATGCCGGGGCCCAGCA
AACACAGAAGTGGATGCTCACAGTCAGCTAATGGATGGATCATAGGGCTC
CCAATGGAGGAGCTAGAGAAAGTAGCCAAGGAGCTAAAGGGATCTGCAAC
CCTATAGGTGGAACAACATTATGAGCTAACCAGTACCCCGGAGCTCTTGA
CTCTAGCTGCATATATATCAAAAGATGGCCTAGTCGGCCATCACTGGAAA
GAGAGGCCCATTGGACTTGCAAACTTTATATGCCCCAGTACAGGGGAACA
CCAGGGCCAAAAAGGGGGAGTGGGTGGGCAGGGGAGTGTTGGCGTTTCCT
CACATTATTATTTTATTCTTTATATTGCCCCCCCATATTTTTTTCGCCTT
TTTGTTTTATCAGACACTTGCCCATCTCCGTTTCTTATATATTTATTTCC
CAATATTCTTCTTTTAATATTTCATGCTGAATTTTTCAGTTTACTCTACT
AACTTCCTTCTTCTTTCCTGTTTTTTCTTATCCTCCCACTATTTCTATTA
TCTCCTATTCCGTCCATCTTATTTTTTTTTCGCTACCTATACACCCCTAG
ACCGTTTTCTCCGCTTGTTTTCG
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCACACTGGTTCTGATCTTCCTCCAGG
GTTAAAGCTTTGGCTTGTTTTTTGATTGACTGGATGGTTGCAGATTGTAA
GAGAACTTCTTTGATCTTCCACTGTTGTCAAGATGTATAGACTGCAAACT
GTTCACTGTTAAAAGGCAATGGCAACATTTTAATTTAAATTGGAACCCTT
AATTGTGGAACCAAAAAATCATTTTTTTTTTTCTTCTCACCAAATATTTC
CCAATTTTTTTCTTTTTTTTCCTCCCTTATTTCTACTTTTCCATTCCCCC
ACATCCTCCTTCCTTTTTTTTTTTCCTATCATTCCTCCTTTCTCCCCCTT
TTTTCTTTTTTCTTAACCTCCTACACCACCTCCCTTTTTATTTTTTACTA
TTACCTTCCCCTTATCCCATCCTTCCTCCCATCTTCTCTTATCTCACTTT
TTTATTTTCTTTTCCACCCTTACAACCTTATTTTTTTCTCCCCTTTTTTC
CCCCTCTCCTTTTTTTTTTTAATCCCCCATCCCACTTTTTTTTTTTTACC
CCCATTCTCTTTCTCCTCCACCTAATCATACCATTTTCTGTTCTTTATTT
TCCACACACCATCTTATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no167_i14.g1 MSMg01no167_i14.g1 CHROMAT_FILE:
MSMg01no167_i14.g1 PHD_FILE: MSMg01no167_i14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:36:19 2005
         (133 letters)



>mm_chr4_48442275_48442807
          Length = 533

 Score =  257 bits (133), Expect = 2e-73
 Identities = 133/133 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacactggttctgatcttcctccagggttaaagctttggcttgttttttgattgactgga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 cacactggttctgatcttcctccagggttaaagctttggcttgttttttgattgactgga 274

                                                                       
Query: 61  tggttgcagattgtaagagaacttctttgatcttccactgttgtcaagatgtatagactg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 tggttgcagattgtaagagaacttctttgatcttccactgttgtcaagatgtatagactg 214

                        
Query: 121 caaactgttcact 133
           |||||||||||||
Sbjct: 213 caaactgttcact 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 133
Length of database: 533
Length adjustment: 8
Effective length of query: 125
Effective length of database: 525
Effective search space:    65625
Effective search space used:    65625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)