BAC Information

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BAC

Clone NameMSMg01-167J03
Chromosome4 (Build37)
Map Location 5,587,173 - 5,587,510
singlet/doubletsinglet
Overlap gene1700012H17Rik
Upstream geneImpad1, LOC100039338
Downstream geneLOC669309, 3110003A22Rik, Cyp7a1, Sdcbp, Nsmaf, LOC100039397, LOC100039414
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-167J03.T7 (MSMg01no167_j03.b1)MSMg01-167J03.TJ (MSMg01no167_j03.g1)
ACCAG365008AG365009
length713747
length of high quality
(start - end)
496 (37 - 532)340 (78 - 417)
definitionCHROMAT_FILE: MSMg01no167_j03.b1 PHD_FILE: MSMg01no167_j03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:36:22 2005CHROMAT_FILE: MSMg01no167_j03.g1 PHD_FILE: MSMg01no167_j03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:36:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXAATCAAAAAGAGGATCCGCGGAATTCAA
GTTTCCCCTCTAAACATAATAAAAGCAACACAAAGCAAACCAACAGCCAA
TATCAAATTAAATGGAGAGATACGTGGAGCAACCCCACTAAAATCAGGGA
CAAGACAAAGCTGTCCACTCTTCTCATATATATTCAATATAATACTTGAA
GTTTTAGCTACAGCAATAAGACAACAAAAGGAGATCAAGGGGATACAAAT
TAAAAGGAAGAAGTCAAGGTGTCATTGTTTGCAGATGACATGACGGTATA
CTTAAGTGAATGCAATAATTCTACCAGAGAAATCTTTACATCTGATAAAC
AACTTCAGCAAAGTGGCCAGATATAAAAATTAACTCAAATAATCTGTAGC
CTTCCTGCATACAATTGTTAAATAGGCTGAGAGAGAAATTAGGGAAACAA
CACCCTTCACAATAGGCAATAATATAAAATATCTTGTAACTCTAACTGAA
GAAGTGAAAGATCTGTATGACAAGAAATTCAAGTCCCTGAAGAAAGAAAT
CAAATAAGACCACAGAAAATGGAGAGATCTCCCACACTCATGGGTCTGTA
GAACTAACAGGAGAAATGGCCATCTTACCCAAAACAATCTACAGATTTAA
GTAATCCCCATCAAAATTCCAACATAATTCTTTCCGAACATGGAAAGAGT
TATTTCTCCATTG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXATTCATAGTCTTCCCAGTTCCCT
GTCTGCCTGGCTGCTAGAGCTCAGTATCTAAGAATCAGAATGTTTCATGG
GGAGAAATGGCTCCAGAAAACCCTAGGGGAAAACAGCAGTTGGAGATTAT
CAAGGAAAACTGCCTAGTCCTGTGCTAGCAAATGCTGAAAGTAGAAAAAC
CTGCAGGAGAAATCAGATAAGCAAGAAAGAAGTCACGAGTTGGACCACAC
ATCACGCTTATGTGAGAGGGTAGAGCTGCTTTCACCTGGAAGAGAATGCA
ACTTGCGGAGGATGGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCCCCCTCTCTCTCTATTTCTGTCTCTCTCTCACCCT
CTCTGTTATTCTTCACTCTCCCCTATAGGTATACTTTCCCCCCCCCACCC
ACTCTCTTTTTCTCTGCCTCTCCCCTCTACTCCCTTCTTTTTCTCTTTTC
CTCCTTCAACCCCCAATTCTCTCCCCCTCTTCTCCCACCCTTCTTCCTTC
TTCTTCTCGCTTACTCTTTCTCCCCCTTTAATCAACGCTCCTCCCTTTAT
CTCACCAGTGCTATAATCCCTATATCCCCTCTCTTTTTTATCCTATTCAC
CCCTCCCCCCCCTGCGGTATTTGTTTGCATGTCACGCTCACCACATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no167_j03.g1 MSMg01no167_j03.g1 CHROMAT_FILE:
MSMg01no167_j03.g1 PHD_FILE: MSMg01no167_j03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:36:22 2005
         (340 letters)



>mm_chr4_5587023_5587762
          Length = 740

 Score =  623 bits (322), Expect = 0.0
 Identities = 334/338 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   attcatagtcttcccagttccctgtctgcctggctgctagagctcagtatctaagaatca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 attcatagtcttcccagttccctgtctgcctggctgctagagctcagtatctaagaatca 429

                                                                       
Query: 61  gaatgtttcatggggagaaatggctccagaaaaccctaggggaaaacagcagttggagat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 gaatgtttcatggggagaaatggctccagaaaaccctaggggaaaacagcagttggagat 369

                                                                       
Query: 121 tatcaaggaaaactgcctagtcctgtgctagcaaatgctgaaagtagaaaaacctgcagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 tatcaaggaaaactgcctagtcctgtgctagcaaatgctgaaagtagaaaaacctgcagg 309

                                                                       
Query: 181 agaaatcagataagcaagaaagaagtcacgagttggaccacacatcacgcttatgtgaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 agaaatcagataagcaagaaagaagtcacgagttggaccacacatcacgcttatgtgaga 249

                                                                       
Query: 241 gggtagagctgctttcacctggaagagaatgcaacttgcggaggatggtctctctctctc 300
           ||| ||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||
Sbjct: 248 gggcagagctgctttcacctggaagagaatgcagcttgtggaggatggtgtctctctctc 189

                                                 
Query: 301 tctctctctctctctctctctctctctctctctctctc 338
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 188 tctctctctctctctctctctctctctctctctctctc 151


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 98
Number of extensions: 44
Number of successful extensions: 44
Number of sequences better than 10.0: 1
Number of HSP's gapped: 42
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 740
Length adjustment: 9
Effective length of query: 331
Effective length of database: 731
Effective search space:   241961
Effective search space used:   241961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)