BAC Information

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BAC

Clone NameMSMg01-167K03
Chromosome4 (Build37)
Map Location 44,566,983 - 44,567,426
singlet/doubletsinglet
Overlap genePax5
Upstream geneTln1, Creb3, Gba2, 1110029E03Rik, LOC100039672, LOC100040179, Npr2, Spag8, Hint2, Serf2-ps, 4930412F15Rik, Olfr70, Olfr71, LOC100039781, 5430416O09Rik, A630077J23Rik, GA_x5J8B7W5BNN-892919-892147, Olfr159, Olfr29-ps1, Olfr156, LOC100040268, Olfr155, Reck, Glipr2, Ccin, Clta, Gne, LOC100040313, OTTMUSG00000007209, Rnf38, Melk
Downstream gene5730488B01Rik, LOC545618, Zcchc7, D4Wsu132e, Grhpr, Zbtb5, 1700055D18Rik, Polr1e, Fbxo10, 1110019J04Rik, Frmpd1, Rg9mtd3, Exosc3, LOC666325, Wdr32, Mcart1, Shb, LOC100040140
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-167K03.T7 (MSMg01no167_k03.b1)MSMg01-167K03.TJ (MSMg01no167_k03.g1)
ACCAG365054AG365055
length735793
length of high quality
(start - end)		443 (45 - 487)269 (75 - 343)
definitionCHROMAT_FILE: MSMg01no167_k03.b1 PHD_FILE: MSMg01no167_k03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:36:27 2005CHROMAT_FILE: MSMg01no167_k03.g1 PHD_FILE: MSMg01no167_k03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:36:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGCTGCCTACCCAGTGTTTATGCCTTACCAAACTCTCTGGAGAATA
GTGGCCCCTAAGATGACTGGTGGCCTCCTACCCAGCAAGCCCTTCTGGGT
AGCCTTCTTAGAGACTGGCCTCTGAGAAACCCATTTCAGGTGCTTAGGCC
TCAGAGGATGCTGGGAAACTGTAATATTGACCAGCATACCTGTAACTCCA
TTGCACATCGTCAAGGGGACACGTCCTAGGCAAAAGGTGGCCAGCTGTGC
AGCTTGCTAACACAGGAATCTCCATCTCCAACCACTCTCTGCTGGAGGCC
AGCCCTGCCCCTCTGAGGACCAGAGTCACTAGTTTTTAAACTCACTCGAT
ACATCTTTACAGTTGGCTCCACTCAGGTTTAAATAACCCAGACTGCTGGG
TTGTTGTTGTTGTATTTTGGTTGTTTTAATCTTTGTTGTTGTTTTATGAC
TGTGTTTTANTATGTTGTGCTGCCTGGTTCGATCCTCATCCACTTTCTTC
AATCTCCGCCTCCTCGTTGCTGGCACCACCGGATTTTTTCCATCTGATTC
TCGCCTTTCTGTTTCTTGCACATTTCCTATCTTTTCTGTCACATCTTCCT
TGCCTCTTCTCTTGTTGCTTTTTCTTCACTCCGTTGCCGCTATTTTCCCT
CCGGTTTCTTGCTTTTCACCTTCTTATCTCTTGCA

CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACTCTGTAGACCAGGCTGGCCTCGTA
CTCATAGAGATCCACCTGCCTCTGCCTCCTGTCCTGAGTGCTGGGATTAA
GGGCGGGGGCCTTATTAAATTAAATTAAATTAAATTAAATTAAATTAAAT
TATTTTTATTGGGTTACTTTTCTTCTAAAAGCTTTAAAGGGCATGGTGGT
GCACCCTTGTAATCCCAGAATATTGAAGACAGAAGGCATCTGGGGCTACA
GAGCATGAGAGAAAGGGGGAGGAAGGGAAGAAGGAAGAGGGGGAGAGATC
TTTTTTTTTTTTTTCCTTCCTCCTTACACCACCATTATTTTTTATCACCC
TTCCTTTTCCCCCCCCCCCCCCCCCAGCAAAAAAAACCCCCCTTCTTCCC
CTTGTATTTTATTAGCCCCTTAAACCATTATACTAATCTACTTTACGCTT
GTATTTTCCCATTTTTCTTTCCTCTTCGGCACATTACCAATTATACTCAA
TTCGACGATTACTCAACCCCGTATGCGGGCCGCTCATTTTCCCTCCCATT
TTCCCACTCTATCTCCCTCCTTCTCCGCCTCACTCTAATTAACTCCCCGT
CCCCTTGTCGGGTCTTTACCTTTTTAGGGCTCCCCCACGTGATATCCCAT
CCCATCCTACTCTTATCGATTGTCCTATGTCCGTTTTACGTTATTATATC
GTGCTTTTTCTCCGTCGTATTTCTTTCCCATTTTATTTTTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no167_k03.b1 MSMg01no167_k03.b1 CHROMAT_FILE:
MSMg01no167_k03.b1 PHD_FILE: MSMg01no167_k03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:36:27 2005
         (443 letters)



>mm_chr4_44566677_44567516
          Length = 840

 Score =  700 bits (362), Expect = 0.0
 Identities = 417/448 (93%), Gaps = 23/448 (5%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagctgcctacccagtgtttatgccttaccaaactctctggagaatagtggcccc 64
           |||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 750 gaattcagctgcctatacagtgtttacgccttaccaaactctctggagaatagtggcccc 691

                                                                       
Query: 65  taagatgactggtggcctcctacccagcaagcccttctgggt------------------ 106
           ||||||||||||||||||||||||||||||||||||||||||                  
Sbjct: 690 taagatgactggtggcctcctacccagcaagcccttctgggtgcttagcctccagaggac 631

                                                                       
Query: 107 agccttcttagagactggcctctgagaaacccatttcaggtgcttaggcctcagaggatg 166
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 agccttcttagagactggcctctgagaaacccatttcaggtgcttaggcctcagaggatg 571

                                                                       
Query: 167 ctgggaaactgtaatatt-gaccagcatacctgtaactccattgcacatcgtcaagggga 225
           |||||||||||||||||| | |||||||||||| ||||||||||||||| ||||||||||
Sbjct: 570 ctgggaaactgtaatattag-ccagcatacctgcaactccattgcacattgtcaagggga 512

                                                                       
Query: 226 cacgtcctaggcaaaaggtggccagctgtgcagcttgctaacacaggaatctccatctcc 285
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 cacgtcctaggcaaaaggtggccagctgtgcagcttgctaacacaggaatctccatctcc 452

                                                                       
Query: 286 aaccactctctgctggaggccagccctgcccctctgaggaccagagtcactagtttttaa 345
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 451 aaccactctctgctggaggccagccctgcccctctgagaaccagagtcactagtttttaa 392

                                                                       
Query: 346 actcactcgatacatctttacagttggctccactcaggtttaaataacccagactgctgg 405
           |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct: 391 actcactcgatacatctttacagttggctccactcaggttcaaataacccagaccgctgg 332

                                       
Query: 406 gttgttgttgttgtattttggttgtttt 433
           |||||||||||   ||||||||||||||
Sbjct: 331 gttgttgttgt---attttggttgtttt 307


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 443
Length of database: 840
Length adjustment: 9
Effective length of query: 434
Effective length of database: 831
Effective search space:   360654
Effective search space used:   360654
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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