BAC Information

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BAC

Clone NameMSMg01-169C19
Chromosome4 (Build37)
Map Location 27,303,893 - 27,304,032
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665079, Gng2-ps1
Downstream geneLOC100040691, Tpm3-rs2, LOC100040842, LOC100040735, LOC230044
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-169C19.T7 (MSMg01no169_c19.b1)MSMg01-169C19.TJ (MSMg01no169_c19.g1)
ACCAG366125AG366126
length685993
length of high quality
(start - end)
303 (46 - 348)---
definitionCHROMAT_FILE: MSMg01no169_c19.b1 PHD_FILE: MSMg01no169_c19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:38:48 2005CHROMAT_FILE: MSMg01no169_c19.g1 PHD_FILE: MSMg01no169_c19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:38:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAATTAAATAAACCAACAAAATAAAGTACTGTTTTCTAGGTATTAG
GGTAGACAATGTAGAAACCATCATAGTACTAGTCTTCCTAATTGTCAGCC
TGAAGAAAGGAAACTTTTGAAACAATTATCTTTTAAAATTGGGAAAGGAT
CTTTACCTATTCTAAATCAGATACGGGACTAATATCCAACATATATAAAA
AACTCAAGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAAAAAATGG
GGCTCAGAACTGATTTTTGAATTCTCACCTGAGGAATACCGAATGGNAGA
TTTGCACTTGATTACCNGNTACANATNCCCAATCATCAAAGAAATGGAAA
TCAAAACAACCCTGAGATAAANCATAAAAACAGTCAGAATGGCGGAGATC
AAAAATTCAGGTGAGAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAAC
ACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAAT
CAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCA
GAAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAA
GGACACATGCTCCACTATGTTCATAGCAGCCTTAA
TTCCTTCCTCCTTCTCCTCTTTCTCTTTTCCTCTCCCCCTTTAGTTGGGC
TCATCTTATGCCCAATTTGGCGTGCGTCTGCTTCTACACCTCTTCCTCAT
CTTTTTGGCCTTATCCTCCCCTTTTCGCAAAAACATGGGCGGCGCGTCAC
GTTGACCAAGCGCCGGAGGGGGGGCCACCCCCCCACCCCCCCTCCCCTNN
TTTTTTTTTAGCTTTTGTCGGCCCGGGTGGCCTTTATTCTGGTGCTTTNT
GCTCGTTATGGGTATTTTTGTCAAATTCTCCTCTGTTTCTCCTGATTACT
TTTTCGACTTCCCTTGTTACCTCTTGGTGTCGCTCCTTCCGTTGTTTCTT
ACTCGTATTTTTACTCAACCTGCGGGTGTTTGAGTTACTACGGGTGCAAA
AACATCTGCGGTTATAAAAGTGTGACAAGGTTGTTTTGTGGAAAAACTGG
TGNAATATTGAGATGGGTGGCGGGAGAAAGGGGGGGTTTTGGCTCATGGG
GGGCTCCCCCCCCCCCGACCCCCCCCCCCCNAACGTNACTCTCCGGGTTG
CATTTNCCCCTCCTTCCCGTCCTTCTCCCGTAATAAAAAAATTCACCCCC
CTTTTTTCTCCGCGCTGCCCTGTCGGGGTTGCTATTTTTCTCTTGTTTCT
TCTGTGGTTCCTTGTGGCGGCTCCTCGGGGCCGTACTCGGACGCGGGCCA
CCCTTCTCCCCTCAATTCGCGTTCCTACGCTCTGACTNACATCCGTGATA
TCTTGGTCCTTCAATCCGCTTCATTGTTCTGTCCTTTTCTCTCTCAACTG
TCGTTCATCCATTTCCATAATGCGCGGCGCTGGTTGGGTGATAACCCCGC
TCCCGTATGCGGCACATCTGATATTCGTGCTATCAATCTTCCAACCAATT
AAACGTGGGTTCATTATTCTGGCAATACCGTGCGCTTTATGAGTTCTTTC
NGCCCTACTCTCTCTGCTTCTTCACTTAATATTTTTGAAAAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no169_c19.b1 MSMg01no169_c19.b1 CHROMAT_FILE:
MSMg01no169_c19.b1 PHD_FILE: MSMg01no169_c19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:38:48 2005
         (303 letters)



>mm_chr4_27303689_27304391
          Length = 703

 Score =  248 bits (128), Expect = 4e-70
 Identities = 137/140 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaattaaataaaccaacaaaataaagtactgttttctaggtattagggtagacaa 64
           |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaattaagtaaaccaactaaataaagtactgttttctaggtattagggtagacaa 264

                                                                       
Query: 65  tgtagaaaccatcatagtactagtcttcctaattgtcagcctgaagaaaggaaacttttg 124
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgtagaagccatcatagtactagtcttcctaattgtcagcctgaagaaaggaaacttttg 324

                               
Query: 125 aaacaattatcttttaaaat 144
           ||||||||||||||||||||
Sbjct: 325 aaacaattatcttttaaaat 344


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 303
Length of database: 703
Length adjustment: 9
Effective length of query: 294
Effective length of database: 694
Effective search space:   204036
Effective search space used:   204036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)