BAC Information

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BAC

Clone NameMSMg01-169M02
Chromosome4 (Build37)
Map Location 71,336,499 - 71,336,781
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039565, LOC100039979
Downstream geneLOC667638, EG667649, Tle1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-169M02.T7 (MSMg01no169_m02.b1)MSMg01-169M02.TJ (MSMg01no169_m02.g1)
ACCAG366526AG366527
length706700
length of high quality
(start - end)
321 (46 - 366)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no169_m02.b1 PHD_FILE: MSMg01no169_m02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:32 2005CHROMAT_FILE: MSMg01no169_m02.g1 PHD_FILE: MSMg01no169_m02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCACCCAGTTAAGTTTATTGTTTGTGCTTAACAAAGACAGGAAAAT
TCCAGAATTCCTTTGCAATGGTTTGTTTGTTTGTTTTGTTTTTGTTTGTT
TTTTTAGTGCTTGCTGGCTCTTTCTAAGAATCAGAGGACTGGGGTCAAGG
AATACTGATAATGAAAAGGGAATCTGGAGTAAATATCTGAATTGATATGT
AAATAATAGACCAGGACTTGGTCTGCAAGAGATATCTGCATGGGCTGTCT
GGGGACATCCTGAGAATGCTTGCTGAGGTGGAGCCTCAGCATGAGGAAGG
TCCTGAGAAAGGAATGACTGAGAGGCACTGATTGAATAGTGACTCAGTCA
GGAGTAGATGCAAGCTAGCAGTTCAGGTAATCTCTCTGCTCTCCGAAGAT
TCTCATCATTCTTTCTTCTCCTTTCTTCTCCTTTCTCATCATTCTTTAGT
GTTCTCCCAACCAGAAAGCCTGAACCCTGTCTTTTATTTACTAAAGCTAC
ATCATCAAGGCTTTGATAATTGTTAGTAATCTTCAAAATTTCTTAAATTT
ACATAAATTCTATGAACCCTGATCCATAGTTTCAACCTCTGCTTCCTTAG
AGCAGAAACTGAACACAAAGCAGCAGCCCGTTTCCTTACAGATTTACACA
TCTTAT
CGAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTGAACTTATATGCAGTTAGAGC
AACTATTTAATCTTTCCTTATACCCTTGATTTTCTAATAGGGAAATATTA
ACCCGATCAAAGACAGAATATAGTTTTATGCTTACATTTTTAGTTAATAA
AAAAAGGCAGTGGTTTGTTTTAGAGTCCTCCAAACTCTTTACAGAACTTT
CCATTCTTTCACTAACGTTGTCTTGATAATTTCTTACCAAGGGAAGAAAA
GTAGTCAATTTCTGCTTCTTCTGGTTCCTGCAGTTCTCCAGGCCACACTT
TCTTTCACCTTGTCTAACCTCTGACACCACCAAGTTTGGGCACCTGATCC
AGACTTAAGTATATTCATCCCCAGCTCTACATCTAGGGCTGTCTCTAATG
GTTACACTCCCTCGCTTCTCTTAGAAATTGTCTGTCCACTCTCCCAGAGA
ATCATGGGATCTGCATTTTTCCAGATGAACAATGCAAATCTTGGCCTTCC
TATCTTGTTCTTGGAAAAGCCTGAAGCTAGCTACTCCTCCGGTTTATCCG
AAGCCCCTCTTGCTGACTGTGCTTCTCACACTTTTCTGGAAAGTGTTCCT
GAGAAGTACTTTCTCAATCATTACTCACCTCTGGATCCACCTCCTGTTTN

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no169_m02.g1 MSMg01no169_m02.g1 CHROMAT_FILE:
MSMg01no169_m02.g1 PHD_FILE: MSMg01no169_m02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:39:32 2005
         (287 letters)



>mm_chr4_71336306_71336992
          Length = 687

 Score =  497 bits (257), Expect = e-145
 Identities = 278/287 (96%), Gaps = 4/287 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   actgaacttatatgcagttagagcaactatttaatctttccttatacccttgattttcta 60
           ||||||||||||||||||||||||||| ||||||||||||||||||  ||||||||||||
Sbjct: 476 actgaacttatatgcagttagagcaaccatttaatctttccttataggcttgattttcta 417

                                                                       
Query: 61  atagggaaatattaacccgatcaaagacagaatatagttttatgcttacatttttagtta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 atagggaaatattaacccgatcaaagacagaatatagttttatgcttacatttttagtta 357

                                                                       
Query: 121 ataaaaaaaggcagtggtttgttttagagtcctccaaactctttacagaactttccattc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 ataaaaaaaggcagtggtttgttttagagtcctccaaactctttacagaactttccattc 297

                                                                       
Query: 181 tttcactaacgttgtcttgataatttcttaccaagggaagaaaagtagtcaatttctgct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 296 tttcactaacgttgtcttgataatttcttaccaagggaagaaaagtagtcaatctctgct 237

                                                          
Query: 241 tcttctggttcctgcagttctccaggccacactttctttcaccttgt 287
           | |||||||||||||||||||||||||||||    ||||||||||||
Sbjct: 236 tgttctggttcctgcagttctccaggccaca----ctttcaccttgt 194


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)