Query= MSMg01no170_c18.b1 MSMg01no170_c18.b1 CHROMAT_FILE:
MSMg01no170_c18.b1 PHD_FILE: MSMg01no170_c18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:40:03 2005
(316 letters)
>mm_chr4_13134292_13135007
Length = 716
Score = 460 bits (238), Expect = e-134
Identities = 278/310 (89%), Gaps = 30/310 (9%)
Strand = Plus / Plus
Query: 5 gaattcagaactcgttgacatgaaaaggagctctttctctcacaaagctgttggattact 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 gaattcagaactcgttgacatgaaaaggagctctttctctcacaaagctgttggattact 294
Query: 65 ctcgagatttgaataaaaatctcttctctctctctctctttctctctctctctctctctc 124
||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 295 ctcgagatttgaataaaaatctc--------------ctttctctctctctctctctctc 340
Query: 125 tctctctctctctctctctctctctctctctctctctctctctctctcctccaccccaac 184
|||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 341 tctctctctctctctctctctctctctctctc----------------ctccaccccaac 384
Query: 185 atatacatataagtgctttctacattaaatctgggcaactctctttatggtgctataaat 244
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 385 atatacatataaatgctttctacattaaatctgggcaactctctttatgttgctataaat 444
Query: 245 tgttgaataaattgctttaactctctggatgtttctagaaaggtcatatgtcctgggttc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgttgaataaattgctttaactctctggatgtttctagaaaggtcatatgtcctgggttc 504
Query: 305 ctatggaaat 314
||||||||||
Sbjct: 505 ctatggaaat 514
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 81
Number of extensions: 33
Number of successful extensions: 33
Number of sequences better than 10.0: 1
Number of HSP's gapped: 24
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space: 217049
Effective search space used: 217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no170_c18.g1 MSMg01no170_c18.g1 CHROMAT_FILE:
MSMg01no170_c18.g1 PHD_FILE: MSMg01no170_c18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:40:03 2005
(245 letters)
>mm_chr4_13267335_13267979
Length = 645
Score = 466 bits (241), Expect = e-136
Identities = 244/245 (99%)
Strand = Plus / Minus
Query: 1 atattgaaatacatatacataaacacatacaataggaaattagaaagggacatgagaggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atattgaaatacatatacataaacacatacaataggaaattagaaagggacatgagaggg 386
Query: 61 gaataggagtgaatatgtgataaacacttaggaacattccataataaaagcaactatttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gaataggagtgaatatgtgataaacacttaggaacattccataataaaagcaactatttt 326
Query: 121 gtatatgattatgtacatcacttggtaacagtccccttacccctgtcacccttttttctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtatatgattatgtacatcacttggtaacagtccccttacccctgtcacccttttttctc 266
Query: 181 tagcaaagatgactaaatgctctttgacaagagaggcttcaaggagaactaatctaagct 240
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tagtaaagatgactaaatgctctttgacaagagaggcttcaaggagaactaatctaagct 206
Query: 241 gtcag 245
|||||
Sbjct: 205 gtcag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space: 150096
Effective search space used: 150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
