BAC Information

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BAC

Clone NameMSMg01-170G24
Chromosome4 (Build37)
Map Location 139,675,072 - 139,675,362
singlet/doubletsinglet
Overlap geneIgsf21
Upstream gene2310028O11Rik, Hspe1-ps4, 9530077C14Rik, Capzb, Pqlc2, LOC100042808, Akr7a5, LOC625977, LOC626000, Mrto4, C230096C10Rik, Zubr1, C79267, Aldh4a1, Tas1r2, Pax7, Gm1667, Klhdc7a
Downstream geneLOC100040728, Arhgef10l, Rcc2, Padi6, Padi4, Padi3, Padi1, Padi2, Sdhb, Atp13a2, Mfap2, Crocc, Necap2, LOC638991, Spata21, D4Ertd22e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-170G24.T7 (MSMg01no170_g24.b1)MSMg01-170G24.TJ (MSMg01no170_g24.g1)
ACCAG367002AG367003
length584818
length of high quality
(start - end)
93 (45 - 137)291 (78 - 368)
definitionCHROMAT_FILE: MSMg01no170_g24.b1 PHD_FILE: MSMg01no170_g24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:23 2005CHROMAT_FILE: MSMg01no170_g24.g1 PHD_FILE: MSMg01no170_g24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACTCCATTTATTGAGATTCAATTGAGGCCAGGTTAAAGCCAACCTT
CCTCTGATCTAGCAGGTAGACCGCTGCGCGCGATCGAATCAGGTGATTGT
GGGAATAAATAGCAATCTGCAGACGGGTAACTGTGCTCCTGAACTGAGCA
AGGCGCATTCCTTTGACACTCATACAAATAAGACCCTCACACGAGGTGGC
GTTCGCCACTTCTAACGTGCTTCCAGTTTTGTTGATGGTACCAGGTTCCC
TGCCCAGTTAGTAACTCCAAATCCGGGCAAAAATTTGGGGCTTTAATAAG
TTTCCCCCGGCAAACCCAGGGGCGCCCGGAAGGTGGGGCTAAGGGGGNNN
TTAAAAAAAAAAAAAAATGGTTGGGGGGGGGGGGTTTTNNNTTNTTTNTN
NNNTNNTTTNGTTTTTTTTTTTTNNTGTGGTGTTTGGGGTNGNTTTTAGG
TTTATTTGTTTTTTTTAATTTTTTATATTTTTTTAATTTAAATTTTTTAA
TATTTTTTTATAAGGTTTTGTATTTTTGTTTTTT
GTCGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTGTGTACTCCTCACAAAGACTCA
ATCTGGGAGCCTTCTCCATTGTGCCCTATAGAACAAGGCTCACCCTCTGG
GCTCCAGTAGGGAGTCAGGGCTTCTGGGTGAGACCCAGCTCCATCATTAA
TGAATCTTTGGTATATCATGAGGCAAGTTTCTCAATGTCTCTGGTAGATG
TCCAACAAGGTCCACCGCAGAGATGATTGGGTCTGGCCTGGAAAGAAGGC
TCAGTTGGTAAAGTGAAAACCTGTCTTTGAATTGCTAGAACCCAAGCAAC
AATCTCTGTGTGTATGTGTTTGTGCCCTTGCGCGTGCCTGTGTATGCGTG
CATATGTGTGTGTGTGTGTGTGTGTGTGTGTAAAAAAAAAACCTCCCCCC
GGGCCCCCCCAACCCCCCCCCTCCCCCCTTTCCTCTCCCCCTCCCCTTTC
TCCCCCCCCCCTCCCCCCCTTTTTTCTTCTTCTCCCCCCCCCCCCCTTTT
TTTCTCCCCCCTCTTTCTTTCTCCCTCCCCCCCCCACCCACCTCCCTCCT
TGACTTTTACCCCCTCCCCCCTATCACCGCCCACTCCCCTACTCCCATTC
CACCTTTTTTAATTTTTCTCCTCCTTTTTTCTAACCCCACCTTACCTCCC
ACCTCCCACCACTCTCTATTCTCCCTCCCTTCCCACCCCCCCCCCCTCCC
ACACCTCCTTTTTCCCTCCCTCCCTCTCCCCCTCCCCCTTCCTCTCCCCC
TCCCCTCTTCTGTCTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no170_g24.g1 MSMg01no170_g24.g1 CHROMAT_FILE:
MSMg01no170_g24.g1 PHD_FILE: MSMg01no170_g24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:40:23 2005
         (291 letters)



>mm_chr4_139674872_139675562
          Length = 691

 Score =  563 bits (291), Expect = e-165
 Identities = 291/291 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtgtactcctcacaaagactcaatctgggagccttctccattgtgccctatagaacaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 tgtgtactcctcacaaagactcaatctgggagccttctccattgtgccctatagaacaag 432

                                                                       
Query: 61  gctcaccctctgggctccagtagggagtcagggcttctgggtgagacccagctccatcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 gctcaccctctgggctccagtagggagtcagggcttctgggtgagacccagctccatcat 372

                                                                       
Query: 121 taatgaatctttggtatatcatgaggcaagtttctcaatgtctctggtagatgtccaaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 taatgaatctttggtatatcatgaggcaagtttctcaatgtctctggtagatgtccaaca 312

                                                                       
Query: 181 aggtccaccgcagagatgattgggtctggcctggaaagaaggctcagttggtaaagtgaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 aggtccaccgcagagatgattgggtctggcctggaaagaaggctcagttggtaaagtgaa 252

                                                              
Query: 241 aacctgtctttgaattgctagaacccaagcaacaatctctgtgtgtatgtg 291
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 aacctgtctttgaattgctagaacccaagcaacaatctctgtgtgtatgtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)