BAC Information

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BAC

Clone NameMSMg01-170L02
Chromosome4 (Build37)
Map Location 18,070,505 - 18,070,793
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040173, Mmp16
Downstream geneLOC667251, LOC435772
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-170L02.T7 (MSMg01no170_l02.b1)MSMg01-170L02.TJ (MSMg01no170_l02.g1)
ACCAG367178AG367179
length730715
length of high quality
(start - end)
321 (46 - 366)289 (77 - 365)
definitionCHROMAT_FILE: MSMg01no170_l02.b1 PHD_FILE: MSMg01no170_l02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:43 2005CHROMAT_FILE: MSMg01no170_l02.g1 PHD_FILE: MSMg01no170_l02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAAGGCCCATACCTAAACATAAAAAAAGCAATATGCAGCAAACCAG
TAGCCGACATCACACTGAATGGAGAAAATCTTGAAGCAATCCCACTAAAA
TCAGGGACTAGACAAGGCTGCCATTCTCCCCCTGTCTATTCAACATAGTA
CTTAAAGTTCTAGCAAGGGCATTTAGAGAACAAAAGTAGGTCAAAGGGAT
ACAAATTGGAAAGGAAGATGTCAAAATATCACTATTTGCAAATGATATGA
TCATAAATGTAAGTGACCCAAAAATTATACCAGAGAACTCCTAAAGCTGA
TAAACAACTTCTTTTTTTTGGCTCGCCCCCCACATTAACTCAAACAAATC
AGTAGCCTTCCTCTACTCAAAGGATAAACAAAATGAGAAAGAAATTAGGG
AAATGACATCCCTCACAATAGCCACAAATAATATTACATACGATCATGTG
GCTCTTAGCAAGCAAGTGAAAGATCTATATGACAAGAACTTCAAGTCTCT
GAAGAAAGAAATCAAAGAAGATCTCAGAATATGGAAAGATCTCCCATGTT
CATGGAATGGCAGGATTAATATATAGTAAAAATGGCTATCTTGCTGAAAG
CAATCTATAGTTCAATGTATTCCCCATCAAAATTCCAAATCAATTCTTCA
TAGAGCTAGAAAGAGCAATTTTCTTTTTTT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTAAAGATAATCTGAAAATATCA
GTCACATGGAAATTTGACAGAAGTACATGGTAGGAATGTCAGTTTATTTT
GTACTTGTACTAATGAGTGACACTAAAGGTCTTCAGATATCGTTTCTATC
ACAATACAGTGTTATAGTTAAAGGTATTAGTAACTGTTGCTACTTCAGTC
CTGTAGACTTTATTACCTTCCAAAGTTGTCACTCTCTTCCAGTACTTCAG
GTTTAGTTCATGTTTTCTATATCTGCCATCTTTCCCTCTATGAGTTTTCC
TAAGAAAGTTGTGTTTGTACTCACCCTCCCGCACATGTTTGTAATAGTCT
CCTGAGAAATGAACACAGTGATTATGAAAGTCCTATTTAACTTCATGTAA
CTATTGATTGGTTATTTAAATTATTAAAGACACATTGTAGAGAATTGTAT
ACTTATGTCCTCAAAGTCCTAAGAGCAATATACATGTGCTGTCTTTTAAG
TCTTGGATGCCATTCATAAGTAGGTGTGTCATAAGTTTGGACTTCCAAAT
GAAGCTTGTTAGAGTTGCTAGAACATCTCAGAAGTGAGGTCTTGTGAAGA
CATTTTACGTCACTAGGTTTAAACACTCAAAGGATAGCAGAAGGTTCAAT
TCTCATTTTTCTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no170_l02.g1 MSMg01no170_l02.g1 CHROMAT_FILE:
MSMg01no170_l02.g1 PHD_FILE: MSMg01no170_l02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:40:43 2005
         (289 letters)



>mm_chr4_18070305_18070993
          Length = 689

 Score =  551 bits (285), Expect = e-161
 Identities = 288/289 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attaaagataatctgaaaatatcagtcacatggaaatttgacagaagtacatggtaggaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 attaaagataatctgaaaatatcagtcacatggaaatttgacagaagtagatggtaggaa 260

                                                                       
Query: 61  tgtcagtttattttgtacttgtactaatgagtgacactaaaggtcttcagatatcgtttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtcagtttattttgtacttgtactaatgagtgacactaaaggtcttcagatatcgtttc 320

                                                                       
Query: 121 tatcacaatacagtgttatagttaaaggtattagtaactgttgctacttcagtcctgtag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatcacaatacagtgttatagttaaaggtattagtaactgttgctacttcagtcctgtag 380

                                                                       
Query: 181 actttattaccttccaaagttgtcactctcttccagtacttcaggtttagttcatgtttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actttattaccttccaaagttgtcactctcttccagtacttcaggtttagttcatgtttt 440

                                                            
Query: 241 ctatatctgccatctttccctctatgagttttcctaagaaagttgtgtt 289
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctatatctgccatctttccctctatgagttttcctaagaaagttgtgtt 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)