BAC Information

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BAC

Clone NameMSMg01-170M15
Chromosome4 (Build37)
Map Location 46,765,681 - 46,765,976
singlet/doubletsinglet
Overlap geneGabbr2
Upstream geneLOC100040567, LOC100040580, Aldh1b1, Igfbpl1, 1300002K09Rik, Tdrd7, Tmod1, BC057893, AU014645, Xpa, LOC624430, LOC666379, LOC666389, Foxe1, 5830415F09Rik, Hemgn, LOC100040643, Anp32b, Nans, Trim14, Coro2a, Tbc1d2
Downstream geneAnks6, LOC435781, Galnt12, Col15a1, Tgfbr1, LOC666236, LOC666473, Alg2, Sec61b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-170M15.T7 (MSMg01no170_m15.b1)MSMg01-170M15.TJ (MSMg01no170_m15.g1)
ACCAG367243AG367244
length719792
length of high quality
(start - end)
313 (48 - 360)211 (75 - 285)
definitionCHROMAT_FILE: MSMg01no170_m15.b1 PHD_FILE: MSMg01no170_m15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:50 2005CHROMAT_FILE: MSMg01no170_m15.g1 PHD_FILE: MSMg01no170_m15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AGTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAGAAGGAAACACAAGGCCTGCCTGAGGGCACGGACTTGGGCTC
CCCAAGTGAGAACTGCGGAGAGTAATACACACACCCACGTGTGGGCAACA
GGCTCCTCAAAGGACAAAAGTCCTTGTCTTATTAGTAATTCTATATGCTA
TTTTGGAGACGCTTGAGTTATATCTCAAAGGGTTGCTAAGAAACATATAT
TTCCTTCTCTCTATCTTTTGATAAGTGAGGTGGGTCTGAGCCGGCAGAGA
TGGAATTGTAACCTGACAGGCTGCACAAGAGGGTTAGTACTTGCCTGTCC
CTGTAAACAGGTTTTTTTTGTGACACCCCCCCCACAGCACACATTTGCAC
CTGTGACAGGGCAAAGGCCTTACGCAGAAAATAAACCCGCCGGAACTCTT
GCATCCCCGCTGGAGAGAAAGGTCAGCTGTGTTCCGGGACGAAGCCTCCT
CTCTCCTCATGTCTCCAGTTTTCCCTGTCTTCCTACCTACCTCTCACACT
GTTTGACTGCAGTGATCTACCACAAAAAGCCAGAGAAGGCTGGTGAACCC
TATGACTTCCTCTCAGAAGCCCTCGCCTCCTCCTCTTCCTGCCCACAGTC
CCTCCCCAACAGGAAGTCTTGTGTTATGTTGCCGGAATCCAACCGCGATC
CTACCCGTCGCCTACCGCA
CGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATTACTACTGCTATTATTATTATTTT
AAAGGTTTGCTATAAGCCTTTCTGGAGTGGTTTAGGCTAATGCATAAGCA
GCAGAAGGAATCCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GATAGATCTTGGCCCTTTGGATGGAGTGGGAGTGCAAAGTGCCTCCTCAC
TGCCCTGAGGAAGAGCGCGCGCACACACACTCACACACTTACACACATAT
ATACCCTTACACACTTCATTTTTTTTTTTTTTTACGACCCTTTCCTCCCC
TGCCCTCTGCCTTTTAATGATTTCCCCAGNNACAAAACCCTGTGTTTTTA
TGTCTGTTAGTATTCGACTTATCCCCCCCCAAAAAAAAAAAAAAGGGCCC
GTGTGCTGGGATGCCCCCTTTTCCCGTTCCGCCTTCTTTGGGCCGTTTCC
GTCTTGCTCCTTTTTTCGGTTACTCCCCCTCTTTTTCTGTTTCTCCTCGT
TTTCTTCCCCTCTCTTTCTTCTTTTCCGTTTCCCCCCCTCTTCCTTTTTT
TCTCCTCCCCCTTCCCTCCGTTTTCCACTCCCCTTTCCCTCTCTCTTTTC
TCTTCTTCCCCTCTCTTTCTCTTTCTTTTCCCTTTTTCTCCTTTCTCCCC
TCCTTTTTCCTTCCCTTCTTCTCTTCCCCCTTTCCTTTCTCCTCCTTACC
TTTTCTCCCTTTGTCTTTTTTTCCCCTACTTCCTTCCCCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no170_m15.b1 MSMg01no170_m15.b1 CHROMAT_FILE:
MSMg01no170_m15.b1 PHD_FILE: MSMg01no170_m15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:40:50 2005
         (313 letters)



>mm_chr4_46765419_46766131
          Length = 713

 Score =  536 bits (277), Expect = e-157
 Identities = 295/309 (95%), Gaps = 13/309 (4%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagaaggaaacacaaggcctgcctgagggcacggacttgggctccccaagtgaga 64
           |||||||||||||||||||||||||||||||||||||||||||||             ||
Sbjct: 558 gaattcagaaggaaacacaaggcctgcctgagggcacggacttgg-------------ga 512

                                                                       
Query: 65  actgcggagagtaatacacacacccacgtgtgggcaacaggctcctcaaaggacaaaagt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 actgcggagagtaatacacacacccacgtgtgggcaacaggctcctcaaaggacaaaagt 452

                                                                       
Query: 125 ccttgtcttattagtaattctatatgctattttggagacgcttgagttatatctcaaagg 184
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 451 ccttgtcttattagtaattctatatgctattttggagatgcttgagttatatctcaaagg 392

                                                                       
Query: 185 gttgctaagaaacatatatttccttctctctatcttttgataagtgaggtgggtctgagc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 gttgctaagaaacatatatttccttctctctatcttttgataagtgaggtgggtctgagc 332

                                                                       
Query: 245 cggcagagatggaattgtaacctgacaggctgcacaagagggttagtacttgcctgtccc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 cggcagagatggaattgtaacctgacaggctgcacaagagggttagtacttgcctgtccc 272

                    
Query: 305 tgtaaacag 313
           |||||||||
Sbjct: 271 tgtaaacag 263


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)