BAC Information

Click to search

BAC

Clone NameMSMg01-172E18
Chromosome4 (Build37)
Map Location 30,588,597 - 30,588,917
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665185
Downstream geneLOC619906, LOC100040864, LOC100040891
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-172E18.T7 (MSMg01no172_e18.b1)MSMg01-172E18.TJ (MSMg01no172_e18.g1)
ACCAG368255AG368256
length732725
length of high quality
(start - end)
317 (40 - 356)157 (421 - 577)
definitionCHROMAT_FILE: MSMg01no172_e18.b1 PHD_FILE: MSMg01no172_e18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:42:44 2005CHROMAT_FILE: MSMg01no172_e18.g1 PHD_FILE: MSMg01no172_e18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:42:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
AAAACCTCACTTCTTTCCAAGCTGTGAGATCAGGGTATGAGCCCTCAACT
GTTCAATCACTTTGCCACCATAAAGGATAACCCTCTAAAACTATAAGCCA
ACTTAAATGCTTTCTTTTATAAGTTGCTTTGGTCATGATGTTTTAACATA
CTAATAGAACAGGAACTAGGCACTACCCATTCTAGTTTAATCACTGAGCC
TCAGAACATACATATAAAACTTGACATCCTGCTGTTATTTTGACAAAAAG
AAGTAAGGTAAAAAGTCTTTATAGATTCTATCAGTTCTACAACACTAAAT
TGTGTTTTTATTTTCGGTTCATNCCCACAATACATGAACATTTAGGATAT
TTTCTAAGCTGCTGTGAATAAAAATGAACTTCTCATTATGGTGATGTGAA
AACTGATGGAAAATTGAGAAGCTGGAGACTACAAGGAATTCCTCAGCTCT
TTGGTGGCACTGCTCTTAAAAATAAATTTTGTATGGTTTCCAAAACTTCC
TGGTTCACTCCTTAGATGCTTTTGTAGAAACATTATCATTATGAAATTCA
TTCTCCCGCTCAGGTACTTAACTTACAGTACAGATTAGGCGACCACCTGT
TCTTCCATGTTCTCCTCACATTACCATCTACTACAAAGTGGCAGATACAA
TCAGGTTCTCATAATACCTCAGCTGATTCTTT
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAGAAGCTCTACTCACGGGAGAGCTCACAAA
GTCAATATATTGGGGCCAATGGTAGATATGTTAGTAAGAATGGCCTGAAG
ACAATGGTCTGAATCAGAGGAGTGGGGGCTAATTCTCACTGCTGATGCTC
AAAAACTGGCCACGCTTGGAACTGAGTTGGATACCATGCATCTTTATCCT
GAATAGGAGAGGACAAGAAGAGAAAAGAGAGAGAAGAGGATGAAAGGGAT
GTTCTTGGGCAAGTATAATTGGATCCAATGAAGAGGTGAAGCCCTGGCTT
GCCTGTTGGTGATTCCCTAACGAGNCGTCAAGCAGTTGTGGGCTTCATTT
GTACAGACAAAACGAAAATTAAAAAAAAAATTCTTCATGTCGTAGGACCT
TGATTTCTGAAAACAAAGTACACATACAGATGCACATTCTCTCTCTCCCT
CCCTCCCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTCTCTCTCTCT
CTGTCTCTCTCTCTCTCACACACACACACATACGAACACACACGTTTATA
CCCAGAGATAGGGAAGTAGATGTGAAGTACCGATTGTTTTTAGGAAACAA
ATGGCACTATGACATGTACCACTCTATATTAAGTGTGTGTCTGCAGTTTT
GGTGCCCCCTGTACAATTTGATATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no172_e18.b1 MSMg01no172_e18.b1 CHROMAT_FILE:
MSMg01no172_e18.b1 PHD_FILE: MSMg01no172_e18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:42:44 2005
         (317 letters)



>mm_chr4_30588403_30589119
          Length = 717

 Score =  555 bits (287), Expect = e-162
 Identities = 308/321 (95%), Gaps = 10/321 (3%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaaaaacctcacttctttccaagc----------tgtgagatcagggtatgagcc 54
           |||||||||||||||||||||||||||||          |||||||||||||||||||||
Sbjct: 195 gaattcaaaaacctcacttctttccaagcatgttttctctgtgagatcagggtatgagcc 254

                                                                       
Query: 55  ctcaactgttcaatcactttgccaccataaaggataaccctctaaaactataagccaact 114
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 255 ctcaactgttcaatcactttgccaccataaaggataaccctcgaaaactataagccaact 314

                                                                       
Query: 115 taaatgctttcttttataagttgctttggtcatgatgttttaacatactaatagaacagg 174
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 taaatgctttcttttataagttgctttggtcatgatgttttaacatactaatagaacagg 374

                                                                       
Query: 175 aactaggcactacccattctagtttaatcactgagcctcagaacatacatataaaacttg 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 aactaggcactacccattctagtttaatcactgagcctcagaacatacatataaaacttg 434

                                                                       
Query: 235 acatcctgctgttattttgacaaaaagaagtaaggtaaaaagtctttatagattctatca 294
           ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 435 acatcctgctgtttttttgacaaaaagaagtaaggtaaaaagtctttagagattctatca 494

                                
Query: 295 gttctacaacactaaattgtg 315
           |||||||||||||||||||||
Sbjct: 495 gttctacaacactaaattgtg 515


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)