XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ACCCAAGTTCCTTAGATGCTCATATGAACCATGTGCACTTGGCCAAAAAC
CTGTCTCTGAGGACAACCCCAGACCTAGTGTGGAAGCTGCTGATGTTGTT
TGCCTGAATGTACATTATTTGCATCCAGTTAATTCTCAATATTTATCTTT
ATAGCAATTAGTGCTGTTCACTGGTCATCGAAGTAATAATAATAATAATA
ATAATAATAATAATAATAATAATACTAGTTGTTATAATTGGCAAGGAGAG
CTGCAAGGTCATACCTGGTATGTACTGAGAATAAGTAATTGTTGATGCTC
AGTCATAACCCGGGCATTTAATTTTAACTTTCTAATCCTCAAACAATATC
ACAGAGGCGACACAGAAAAGAATTTTGGTGGATTATGGGGTGGCATGTTG
TGGAATCCTGTTTTTCTGACATGACATGGCTATTGTGTTCTAACTCAAAG
AATCTGTTTAAGGTCTTTATAAGTCTTAGCTAATCATAATCCTGTTATGG
CATGTGGAGAACTTGTCGTTTTTCCACATCACCTAGGTTATGTATTATAC
TACTATCCTATGTAACGACCACCCCCCTTTTCCACTTTTTCACATCTGTT
TCCTCTTTTTCGCCCCTTTGTTAACAACCCAATCATTTTTGTCTGCCCTA
TCCCACACCTATTTTTTCCTCCTCCCGCC

CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTTGTACAATTCAGTTTTCATCCGCCAGGA
CTGATCAGTTCATTTTGTCCCTTTTAATCTCTTATTTTCTTCTTCCTTTG
GCTTTGTTTTCTTGAGTTTTCCTTAATTTTTCAGAAATTCAAGGTTAATG
AGTAGCTATGTAGCATTTTGTAACTTCGTGAGTTACAATAAGGGAGTCAT
TGTTTTCTTGGACACAGTGTTTCAAGAAAGATGATTGCAGTTAGTCATTT
ATGATTATGAAGAGAGATTGCTGCATTTACTCCACAGCAGACAAAACAAT
AAAGAATTATTATTATCATATAGTTTTTAATATTACATTATTTTTAAACT
CCTTCAGAAAAATATACTGTCTCTTTCATTATTAATATGAGATCAATAGA
AAAATATTTATTGCTGGATTTTTTTTCTTGTCTGCCCTCACGGAAACTCT
ATTTTGGAAAGGGGATTTTTCTCTGTCACTAAAATTTCCCCTGCATCACT
TCAGTACATTTTAGTTGCTATGTTGACTTATGGAATGAGAATGTAATACA
GAAACAACAAAGGTTATAGGAATGACTGTGTCGTTGAACCATGATAATAT
TTGCTGTAGAACCTTTGAGCTTGATGTTGAAGTTGTGGTGATTGACATTA
CCAAAGTACTGTTTCTCTTCTTGTCTTTCATGAAAA

Query= MSMg01no172_h14.g1 MSMg01no172_h14.g1 CHROMAT_FILE:
MSMg01no172_h14.g1 PHD_FILE: MSMg01no172_h14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:42:57 2005
         (614 letters)



>mm_chr4_50781098_50782111
          Length = 1014

 Score = 1143 bits (591), Expect = 0.0
 Identities = 609/615 (99%), Gaps = 1/615 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgtacaattcagttttcatccgccaggactgatcagttcattttgtcccttttaatct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||
Sbjct: 201 tttgtacaattcagttttcatccgccaggactgatcagttcattttgttgtttttaatct 260

                                                                       
Query: 61  cttattttcttcttcctttggctttgttttcttgagttttccttaatttttcagaaattc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttattttcttcttcctttggctttgttttcttgagttttccttaatttttcagaaattc 320

                                                                       
Query: 121 aaggttaatgagtagctatgtagcattttgtaacttcgtgagttacaataagggagtcat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaggttaatgagtagctatgtagcattttgtaacttcgtgagttacaataagggagtcat 380

                                                                       
Query: 181 tgttttcttggacacagtgtttcaagaaagatgattgcagttagtcatttatgattatga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgttttcttggacacagtgtttcaagaaagatgattgcagttagtcatttatgattatga 440

                                                                       
Query: 241 agagagattgctgcatttactccacagcagacaaaacaataaagaattattattatcata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agagagattgctgcatttactccacagcagacaaaacaataaagaattattattatcata 500

                                                                       
Query: 301 tagtttttaatattacattatttttaaactccttcagaaaaatatactgtctctttcatt 360
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tagcttttaatattacattatttttaaactccttcagaaaaatatactgtctctttcatt 560

                                                                       
Query: 361 attaatatgagatcaatagaaaaatatttattgctggatttttttt-cttgtctgccctc 419
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 561 attaatatgagatcaatagaaaaatatttattgctggatttttttttcttgtctgccctc 620

                                                                       
Query: 420 acggaaactctattttggaaaggggatttttctctgtcactaaaatttcccctgcatcac 479
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 621 acggaaactctattttggaaaggcgatttttctctgtcactaaaatttcccctgcatcac 680

                                                                       
Query: 480 ttcagtacattttagttgctatgttgacttatggaatgagaatgtaatacagaaacaaca 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttcagtacattttagttgctatgttgacttatggaatgagaatgtaatacagaaacaaca 740

                                                                       
Query: 540 aaggttataggaatgactgtgtcgttgaaccatgataatatttgctgtagaacctttgag 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aaggttataggaatgactgtgtcgttgaaccatgataatatttgctgtagaacctttgag 800

                          
Query: 600 cttgatgttgaagtt 614
           |||||||||||||||
Sbjct: 801 cttgatgttgaagtt 815


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1014
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1004
Effective search space:   606416
Effective search space used:   606416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)