Query= MSMg01no173_e09.b1 MSMg01no173_e09.b1 CHROMAT_FILE:
MSMg01no173_e09.b1 PHD_FILE: MSMg01no173_e09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:55 2005
(319 letters)
>mm_chr4_117133993_117134711
Length = 719
Score = 574 bits (297), Expect = e-168
Identities = 312/317 (98%), Gaps = 1/317 (0%)
Strand = Plus / Minus
Query: 4 ggaattcagagatcctcctgtctctgcctcccaggtgctgggattattggtgtgtgcaac 63
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 599 ggaattcagagatcctcctgtctctgcctcccaagtgctgggattattggtgtgtgcaac 540
Query: 64 cattcctgcc-ccatttttagtatttttagatttgggttcctatgggaaatgctgctgtt 122
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 cattcctgccaacatttttagtatttttagatttgggttcctatgggaaatgctgctgtt 480
Query: 123 agcattttaaaatccattcttatatttaagacaagttgctttatggccacatcaaggatt 182
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 479 agcattttaaaatccattcttatatttaagacaagttgctttatggccacatcaaggact 420
Query: 183 agggtttcttcaaccttactggctaatgttcaattgcattcaaaagatgtactaccagtt 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 agggtttcttcaaccttactggctaatgttcaattgcattcaaaagatgtactaccagtt 360
Query: 243 ttctcctttatttctttttatcttatacagcagttgctacatgatggagaatacagactg 302
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 359 ttctcctttatttctttttaccttatacagcagttgctacatgatggagaatacagactg 300
Query: 303 tcacagttgtttcctgc 319
|||||||||||||||||
Sbjct: 299 tcacagttgtttcctgc 283
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space: 220100
Effective search space used: 220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no173_e09.g1 MSMg01no173_e09.g1 CHROMAT_FILE:
MSMg01no173_e09.g1 PHD_FILE: MSMg01no173_e09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:55 2005
(139 letters)
>mm_chr4_116976199_116976737
Length = 539
Score = 261 bits (135), Expect = 1e-74
Identities = 138/139 (99%)
Strand = Plus / Plus
Query: 1 cacaggtcaccaatccaggaggctcactttcgggctcttgcctggggggtgaaggggcga 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 cacaggtcaccaatccaggaggctcactttcgggctcttgcctgggtggtgaaggggcga 260
Query: 61 cctcagtttcctcatcggtgaactcgtccttctgttcaggatactgatggtgggaagaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctcagtttcctcatcggtgaactcgtccttctgttcaggatactgatggtgggaagaag 320
Query: 121 gaatgtgggtggggtggat 139
|||||||||||||||||||
Sbjct: 321 gaatgtgggtggggtggat 339
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 139
Length of database: 539
Length adjustment: 8
Effective length of query: 131
Effective length of database: 531
Effective search space: 69561
Effective search space used: 69561
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
