BAC Information

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BAC

Clone NameMSMg01-173F19
Chromosome4 (Build37)
Map Location 119,876,959 - 119,877,244
singlet/doubletsinglet
Overlap genenone
Upstream gene4930538K18Rik, AU022252, Lepre1, Cldn19, Ybx1, Ppih, 1700041C02Rik, Ldha-ps2, LOC100041471, Ppcs, Zmynd12, BC057371, LOC666766, LOC384052, AA415398, Foxj3, Guca2a, Guca2b, Hivep3, Edn2
Downstream geneFoxo6, Scmh1, Slfnl1, Ctps, EG667063, Cited4, Kcnq4, Nfyc, Rims3, LOC626489, 3110037I16Rik, Zfp69, Smap1l, Col9a2, Zmpste24, Tmco2, LOC100042174, Rlf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-173F19.T7 (MSMg01no173_f19.b1)MSMg01-173F19.TJ (MSMg01no173_f19.g1)
ACCAG368990AG368991
length724747
length of high quality
(start - end)
194 (127 - 320)288 (75 - 362)
definitionCHROMAT_FILE: MSMg01no173_f19.b1 PHD_FILE: MSMg01no173_f19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:01 2005CHROMAT_FILE: MSMg01no173_f19.g1 PHD_FILE: MSMg01no173_f19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAGACTTCTCCCGGAAGAGGTACCAGTGCCACCACTTCTCTGGTTC
CCATGAAGGTGACATACATGGTCCATGTGTCATGCCACTAGCAGAGTGTA
AATTAGCCCAGCAATTTTTGCAGGACCTTTCTTCCCTGGGACTCCACTTA
TTTTGTGATGCTGAGAATGGGATGCACAGCCTTGTCCATGCTAGCCAAAT
GCTTGAGCCCTGAGCTACCTCAGCACTTCGAGTGTCCTCTCCTGTAGAAG
CACATGTTTACAGGCATGCACTTTTTGTCAGTGGTTGTAAAGTTTTCTCT
GACAAAGATTTTCTTGACCTTANNCCATGTNCCCCAAGAGAAGTAATGGA
AGAGATGCAGCCATGGTCTCAAAAATATTAAAAGAAAGTAGTTATGCGCA
GTCTCAAAGATGCATTGCCAAGAAAAGAAAGAGCAGACTGAAGAGATGGA
CGAAGGGCAGAAGTGGGTACTCAGAAGTGAGGAGGTGACCTGCAAGAACA
GGGTCCTGACAGACATAAGAGGAGGCGAGAAGAGGCAGCAGAGGGCAGAC
GGCTGACTCCCTTCATGGGCATGCCCTGGATACAACTTTCATTATTAGTA
TCCTATCCAGAGGTGAGATGATGCATAGCTTACTGGATGGGTCTAGAGAC
TGATGCCAATGTAGAGGAGGCTAT
ACGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGAAGCTGGAGTGGGGGCTCTTAAAA
GGAGCAGGAGAAGGAGAAGCCCCCGGAGGAAGAGAAGGCAGCTATGGTGG
CTGTGGGTTTCCCAGGGGATTATCGGGAGAAGGGATCTTTAGGCAGAGAC
CTGGGACTGTCTGCCAAAACTTGCTCAGAACAGCTTCCTGGCTTCCAGGC
CAGATAATTGTAAACAAAACAGATGGGAGCCCAGGCAGAACCTCCAAGCC
CTTTGTAGAGTGAGGGGCCCATGATGGGGCACGCAGGAGCAGACACCATG
GCCCTGAGTCTTTGTAGGTGCCCCCCTCGCCTTAGTGGTGGAGACAAGGA
GCTACAGACCTTTCTGATCAGTGCCAGGGAAGACACTTGTCTACGGTCGG
TCCCGTGCCTGCATGTGCTGTGCTGGGACAGTGCTGGAGAGAGTGGACTC
TGGTCCTGCTCCTATGTGACTGAGGAGGAGGACTCACTCAGCACCATCGA
CTGGAGCAGAGGGGCACTGCACAAGTGGCGTAGGAAGGCAGATCCCGAGG
TACTAAAGAGCCCCTGAGTCTCCAAGACTTGTCTTGTAGGCCTCGTGTTC
TGTTGCAATCATGCGCTCGGAACGCCGCTGCGTTGTGTTTTTTTTTTCCT
CTTCTCCTCATTTGATCTTTACTTTTTATCTCCCCCCTTACTCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no173_f19.g1 MSMg01no173_f19.g1 CHROMAT_FILE:
MSMg01no173_f19.g1 PHD_FILE: MSMg01no173_f19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:01 2005
         (288 letters)



>mm_chr4_119876759_119877446
          Length = 688

 Score =  507 bits (262), Expect = e-148
 Identities = 280/290 (96%), Gaps = 8/290 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgaagctggagtgggggctcttaaaaggagcaggagaaggagaagccccc----ggagga 56
           ||||||||||||||||||||||||||||||||||||||||||||||        ||||||
Sbjct: 201 tgaagctggagtgggggctcttaaaaggagcaggagaaggagaagc----aggaggagga 256

                                                                       
Query: 57  agagaaggcagctatggtggctgtgggtttcccaggggattatcgggagaagggatcttt 116
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 agagaaggcagctatggtggctgtgggtttcccaggggattatcgggagaagggatcttt 316

                                                                       
Query: 117 aggcagagacctgggactgtctgccaaaacttgctcagaacagcttcctggcttccaggc 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 aggcagagacctgggactgtctgccaaaacttgctcagaacagcttcctggcttccaggc 376

                                                                       
Query: 177 cagataattgtaaacaaaacagatgggagcccaggcagaacctccaagccctttgtagag 236
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 377 cagataattgtaaacaaaacagatgggagcccaggcagaacttccaagccctttgtagag 436

                                                             
Query: 237 tgaggggcccatgatggggcacgcaggagcagacaccatggccctgagtc 286
           ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 437 tgaggggcccaggatggggcacgcaggagcagacaccatggccctgagtc 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)