Query= MSMg01no173_f22.b1 MSMg01no173_f22.b1 CHROMAT_FILE:
MSMg01no173_f22.b1 PHD_FILE: MSMg01no173_f22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:02 2005
(361 letters)
>mm_chr4_68016615_68017379
Length = 765
Score = 652 bits (337), Expect = 0.0
Identities = 355/363 (97%), Gaps = 4/363 (1%)
Strand = Plus / Plus
Query: 2 cttaattgaatggtaacaaaaataaattaacaaagatgatctaactcagcattaatagtg 61
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 202 cttaattgaatggtaacaaaaataaattaacaaagatgatctaactctgcattaatagtg 261
Query: 62 tagagaaaaattgtgctgcttgttattagtagacaatatacaatatatata----aaagg 117
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 262 tagagaaaaattgtgctgcttgttattagtagacaatatacaatatatatatataaaagg 321
Query: 118 aaagtcaatagaaatgaaggcagatagctataaatccataaaacctaaagtttaatctct 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 aaagtcaatagaaatgaaggcagatagctataaatccataaaacctaaagtttaatctct 381
Query: 178 gaaatcaacaattgaatagaaaatctctacttagactgagtgtaaaaggtagccagaaaa 237
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 382 gaaatcaacaattgaatagaaaatttctacttagactgagtgtaaaaggtagccagaaaa 441
Query: 238 cacaattgttctgttgatgaattacaaagaaaacctcagtacaagtccttaagaacttca 297
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 cacaattgttctgttgatgaattacaaagaaaacctcagtacaagtccttaagaacttcg 501
Query: 298 taggattgtagacagtgtcatagacaatctgatgatagtcagcttgaaatatccatcaag 357
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 502 taggattgtagacagtgtcatagacaacctgatgatagtcagcttgaaatatccatcaag 561
Query: 358 acc 360
|||
Sbjct: 562 acc 564
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 361
Length of database: 765
Length adjustment: 9
Effective length of query: 352
Effective length of database: 756
Effective search space: 266112
Effective search space used: 266112
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no173_f22.g1 MSMg01no173_f22.g1 CHROMAT_FILE:
MSMg01no173_f22.g1 PHD_FILE: MSMg01no173_f22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:02 2005
(285 letters)
>mm_chr4_68094705_68095389
Length = 685
Score = 528 bits (273), Expect = e-154
Identities = 282/285 (98%)
Strand = Plus / Minus
Query: 1 agtgttatgtatagatgagatagaaagtagaagtttaattttgttcctatataagaaata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 agtgttatgtatagatgagatagaaagtagaagtttaattttgttcctatataagaaata 426
Query: 61 taattgtattttcttgttgcttttctttctaggacacagggactgaactttggccagtga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 taattgtattttcttgttgcttttctttctaggacacagggactgaactttggccagtga 366
Query: 121 catgtaggagaaaagtatcctgtcctcctattggacacttcgtgagatattttttttatg 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 365 catgtaggagaaaagtatcctgtcctcctattggacacttcgtgagatatttttgttatg 306
Query: 181 tttccatccacagccctttcattccatgtgactgaaaaggaaagtaactgaaaaaatgga 240
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 305 tttccatccacagccctttcattccatgtgactgaaaaggaaagtaactgataaaatgga 246
Query: 241 atccttccagactgcctaaatatttgtgctcacagatgagcaacc 285
|||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 245 atccttccggactgcctaaatatttgtgctcacagatgagcaacc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space: 186576
Effective search space used: 186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
