BAC Information

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BAC

Clone NameMSMg01-173G20
Chromosome4 (Build37)
Map Location 77,560,317 - 77,560,653
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100039974, LOC100039996
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-173G20.T7 (MSMg01no173_g20.b1)MSMg01-173G20.TJ (MSMg01no173_g20.g1)
ACCAG369037AG369038
length725726
length of high quality
(start - end)
674 (46 - 719)339 (388 - 726)
definitionCHROMAT_FILE: MSMg01no173_g20.b1 PHD_FILE: MSMg01no173_g20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:06 2005CHROMAT_FILE: MSMg01no173_g20.g1 PHD_FILE: MSMg01no173_g20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGTTCTTTCCTGAACCCCATTTTTTAATGGGGTTATTTGAATT
TCTGGAGTCCAGCTTCTTAAGCTCCTTGTATATATTAGATATTAGTCCCA
TATCAGATTTAGGGTTGGTAAAAATCCTTTCCCAATCTGTTGGTGGTACA
TTTACATAATGGAATACTACTCAGCTATTAAAAACAGTGGATTTGTGAAA
TTCTTGGGCAAATGGATATATCTGGAGGATATCATCCTTAGTGAGGTAAC
CCAATCACAAAAGAAGTCATTATATATGCACACAATGATAAGTGGATATT
AGCCCAGAAACATAAAATACCCAAGATACAATTTGCAAAACACAAGAAAA
TCAAGAAGAGGGAAGACCAATGGGTAGATACTTCATTCTTCCTTAGAATA
GGGAACAAAATACCCATGAAAGGAGTTACAGAGACAAAGTTTGGAGCTAA
GATGAAAGGATGTACTATCCAGAGACTACCCCACATGGAGATCTATCCCA
TAATCAGCCACCAAACCCAGACACTATTGCACATGCCAGAAAGATTTTGC
TGAAGGGACCCTGTTATAGTTGTCTCATATGAGGTTATGCCAGTGCCTGG
AAAATACAGTAGTGGATGCTCACAGTCATCTATAAGATGGAACACAAGGC
CCCCAATGGAGAAGCTAGAGAAAGN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAAGAACAAAAACTATAAAATCCC
CCTGTTTAGTTATTTGACAGTGGTACCAACAAATATCAAATAAATGCATA
AAATTAATAATTCACTATATGTTAAAATAATATGGAGAGATAGGGAAATA
ATTCAATAATTAAGAGAGTTCCAACATTAATTTGGGCAGCAAAAGATTTA
GAAGAAACACTTTATGCTCTTGGGAGATGCAGGTTTCAGCATCCCTATTC
CTGCATTCCAGCCTCTGTGGTAGCTTTGCCAGACTGGGACATGTACATTT
TTCTCTCTGATGTATTATTTCTCAACGCTCCCCTGCCACCATGTAGTACC
TATCGAAATTTCTTTGTGAAGGAATTGTATCTCTGTTTTCGCATAGTAAC
ACTGTGTAATAAAATTTCATGGATTCCCTCAATGTTATACTTTTGTTAGA
TTTTTAAGTACTATATTTTCTTTTTATTTATAGAATAAAATCAAATATCT
TATTTTGAGTTTTAAGAGATTTAGGCAAGCTTCCTTAACTAAATGAGCAA
TCAATGCCTTTGAATATCCAAATCTATAAGGCCGTTTCTGCCTGCTGCCC
AGAAAATAATATCCACCTCATTTAGAAACTCTAGTTTTAAAGCTCAAAGT
TAGTTCCTTTAAGTTGAATAATCTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no173_g20.g1 MSMg01no173_g20.g1 CHROMAT_FILE:
MSMg01no173_g20.g1 PHD_FILE: MSMg01no173_g20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:06 2005
         (339 letters)



>mm_chr4_77560117_77560853
          Length = 737

 Score =  621 bits (321), Expect = 0.0
 Identities = 334/339 (98%), Gaps = 2/339 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   accatgtagtacctatcgaaatttctttgtgaaggaattgtatctctgttttcgcatagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 accatgtagtacctatcgaaatttctttgtgaaggaattgtatctctgttttcgcatagt 478

                                                                       
Query: 61  aacactgtgtaataaaatttcatggattccctcaatgttatacttttgttagatttttaa 120
           |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 aacac--tgtaataaaatttcatggattccctcaatgttatacttttgttagatttttaa 420

                                                                       
Query: 121 gtactatattttctttttatttatagaataaaatcaaatatcttattttgagttttaaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 419 gtactatattttctttttatttatagaataaaatcaaatatcttattttgagtttcaaga 360

                                                                       
Query: 181 gatttaggcaagcttccttaactaaatgagcaatcaatgcctttgaatatccaaatctat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 gatttaggcaagcttccttaactaaatgagcaatcaatgcctttgaatatccaaatctat 300

                                                                       
Query: 241 aaggccgtttctgcctgctgcccagaaaataatatccacctcatttagaaactctagttt 300
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 299 aaggccgtttctgcctgctgcccagaaaatagtatccacctcatttagaaactctagttt 240

                                                  
Query: 301 taaagctcaaagttagttcctttaagttgaataatctga 339
           |||||||||||||||||||| ||||||||||||||||||
Sbjct: 239 taaagctcaaagttagttccgttaagttgaataatctga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 737
Length adjustment: 9
Effective length of query: 330
Effective length of database: 728
Effective search space:   240240
Effective search space used:   240240
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)