Query= MSMg01no173_o04.b1 MSMg01no173_o04.b1 CHROMAT_FILE:
MSMg01no173_o04.b1 PHD_FILE: MSMg01no173_o04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:38 2005
(570 letters)
>mm_chr4_126940269_126941236
Length = 968
Score = 1013 bits (524), Expect = 0.0
Identities = 555/566 (98%), Gaps = 2/566 (0%)
Strand = Plus / Minus
Query: 5 gaattcttcctggcctctgacagtcagctcctctgccttcagccaacccccgcccaagtc 64
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 gaattcctcctggcctctgacagtcagctcctctgccttcagccaacccccgcccaagtc 709
Query: 65 cagtcagagcaaaaggacctatttttaaagattctcacaacctcagccttcctcagtttc 124
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 cagtcagagcaaaacgacctatttttaaagattctcacaacctcagccttcctcagtttc 649
Query: 125 accagccacaccccgtctttccaggatctcagggcttttactgctgggaaaggcttctca 184
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct: 648 accagccacaccccgtctttccaggatctcggggcttttactgctgggaaaggcgtctca 589
Query: 185 ggactcctcgagtacctccgtggccctctaaacacatttcctggtcggagctggtcactc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 ggactcctcgagtacctccgtggccctctaaacacatttcctggtcggagctggtcactc 529
Query: 245 tgctctgaacgataaccttcctgggctcacaaaggagtcacaatgcaaccttatcttctc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 tgctctgaacgataaccttcctgggctcacaaaggagtcacaatgcaaccttatcttctc 469
Query: 305 agagtggagacccttcaattccttcagtttcctctaggttgtgaaaagcaagacaaaaaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 agagtggagacccttcaattccttcagtttcctctaggttgtgaaaagcaagacaaaaaa 409
Query: 365 ctgagaaagcatggagtcttcctttatctccttgctccaggcaggctggggaaaggtttt 424
|||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 408 ctgagagagcatggagtcttcctttatctccttgctccaggcaggctagggaaaggtttt 349
Query: 425 cccagggttgttaatccccactgcacccagcctcccagcagaggcaaaaggcaaaagatc 484
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct: 348 cccagggttgttaatccccactgcactcagcctcccagcagaggcaaaaggcaaaagacc 289
Query: 485 aagaaccgactaacagaagagcagcaagagagagatggatggtgtgtgaagctgggtact 544
|||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct: 288 aagaaccgactaacagaagagcagtaagagaga--tggatggtgtgtgaagctgggtact 231
Query: 545 gtgcagagggctttgcctctcagttg 570
||||||||||||||||||||||||||
Sbjct: 230 gtgcagagggctttgcctctcagttg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 968
Length adjustment: 10
Effective length of query: 560
Effective length of database: 958
Effective search space: 536480
Effective search space used: 536480
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no173_o04.g1 MSMg01no173_o04.g1 CHROMAT_FILE:
MSMg01no173_o04.g1 PHD_FILE: MSMg01no173_o04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:38 2005
(289 letters)
>mm_chr4_126773301_126773989
Length = 689
Score = 493 bits (255), Expect = e-144
Identities = 282/293 (96%), Gaps = 5/293 (1%)
Strand = Plus / Plus
Query: 1 ttagttgatttggtaccatcatcatgttgtaatacttttggtacttaccacgtactgttt 60
||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 201 ttagttgatttggtaccatcatcatgttgtaatacttttggtacttattaggtactgttt 260
Query: 61 actgtaataaataaaagtctcgttaagtatgacgtttgtttcagttttaattattactgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actgtaataaataaaagtctcgttaagtatgacgtttgtttcagttttaattattactgg 320
Query: 121 ttgagatttctttttattctttgtgtttatatgtatatgggcatgcatatgtgagctgtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgagatttctttttattctttgtgtttatatgtatatgggcatgcatatgtgagctgtt 380
Query: 181 gggaggcttcatcagttactctgtaccttattcgctgaggctgggtttctcagttgtgta 240
|||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||
Sbjct: 381 gggaggcttcatcagttactctgtaccttatttgctaaggctaggtttctcagttgtgta 440
Query: 241 acttaaaatttttttt-aatgtttattatttatttattt----ttggtttttc 288
|||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct: 441 acttaaaatttttttttaatgtttattatttatttatttatttttggtttttc 493
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space: 190400
Effective search space used: 190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
