Query= MSMg01no174_j02.b1 MSMg01no174_j02.b1 CHROMAT_FILE:
MSMg01no174_j02.b1 PHD_FILE: MSMg01no174_j02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:45:28 2005
(315 letters)
>mm_chr4_78735886_78736602
Length = 717
Score = 518 bits (268), Expect = e-151
Identities = 302/314 (96%), Gaps = 4/314 (1%)
Strand = Plus / Plus
Query: 5 gaattctttatttgccatttttt--gtgaataaaatgtaattctcctgcacatctgctaa 62
||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 205 gaattctttatttaccattttttttgtgaataaaatgtaattctcctgcacatccgctaa 264
Query: 63 gttttttcaatataaactgagtcctacaaaagaagtaggtgcatattttaactcatttgc 122
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 265 gttttttcaatataaactgagtcctacaaaagacgtaggtgcatattttaactcatttgc 324
Query: 123 tactgcattctaagtttaattctcagtgtatgatttgtgaataaagacatatgaattaaa 182
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tagtgcattctaagtttaattctcagtgtatgatttgtgaataaagacatatgaattaaa 384
Query: 183 aataaggtttagaatatctaaacaagacaatgttaacactgaaaaggtactattcaacag 242
||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct: 385 aataaggtttagaatatctaaacaagacaatgttagcactgaaaaggtgctattcaacag 444
Query: 243 -atacattaaaaatagtctttcggtaataaatcctctgaagatgtcaaagcacaaccaac 301
| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct: 445 ga-acattaaaaatagtcttttggtaataaatcctctgaaggtgtcaaagcacaaccaac 503
Query: 302 tttgaatcttggtc 315
||||||||||||||
Sbjct: 504 tttgaatcttggtc 517
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 717
Length adjustment: 9
Effective length of query: 306
Effective length of database: 708
Effective search space: 216648
Effective search space used: 216648
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no174_j02.g1 MSMg01no174_j02.g1 CHROMAT_FILE:
MSMg01no174_j02.g1 PHD_FILE: MSMg01no174_j02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:45:28 2005
(634 letters)
>mm_chr4_78763234_78764265
Length = 1032
Score = 1149 bits (594), Expect = 0.0
Identities = 624/634 (98%), Gaps = 2/634 (0%)
Strand = Plus / Minus
Query: 1 tcagatcagaattttgctaacatgaccagaagaaaagataatactctcaaatgtccataa 60
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 832 tcagatcagaatgttgttaacatgaccagaagaaaagataatactctcaaatgtccataa 773
Query: 61 ctgtttagacattttttataaagattattatgcatactactttgtagataaattcagctc 120
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 ctgtttagaca-tttttataaagattattatgcatactactttgtagataaattcagctc 714
Query: 121 aaatttaatttcaggtattacagttaatgatattatctgtgaaaacaaacataattataa 180
||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 713 aaatttaatttcacgtattacagttaatgatattatctgtgaaaataaacataattataa 654
Query: 181 aaatgacttccatcaataagcactcatatttatcaaaaaacttataaatagatgtttatg 240
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 aaataacttccatcaataagcactcatatttatcaaaaaacttataaatagatgtttatg 594
Query: 241 aacatcctcactgggaaagattcttccatcttttacacccactatgtatgagtgagatgc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 aacatcctcactgggaaagattcttccatcttttacacccactatgtatgagtgagatgc 534
Query: 301 taaccagaagataatttgtcatgataggcttctacaaaattcaaaattgcaaactgtaat 360
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 taaccagaagataattcgtcatgataggcttctacaaaattcaaaattgcaaactgtaat 474
Query: 361 actcagaaattatgagcataaagtatgaagaagtggcaagcataagatatactgtacagt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 actcagaaattatgagcataaagtatgaagaagtggcaagcataagatatactgtacagt 414
Query: 421 gtcctaatattctaagtcacaatttaaaaaaaataggctaggaggactcctaaagtatac 480
|||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct: 413 gtcctaatattctaagtcacaaattaaaaaaa-taggctaggaggactcctaaagtatac 355
Query: 481 tgatacactcacatatatttggaaaagcccaaataaataaaaggacatttaccaagagta 540
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 tgatacattcacatatatttggaaaagcccaaataaataaaaggacatttaccaagagta 295
Query: 541 aataccccctgtagtccacaaaccctttaacttgtcatttactgtgaagatctcaacatt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 aataccccctgtagtccacaaaccctttaacttgtcatttactgtgaagatctcaacatt 235
Query: 601 taatggactttacattttttctatttcagacagt 634
||||||||||||||||||||||||||||||||||
Sbjct: 234 taatggactttacattttttctatttcagacagt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1032
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1022
Effective search space: 637728
Effective search space used: 637728
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
