Query= MSMg01no174_j07.b1 MSMg01no174_j07.b1 CHROMAT_FILE:
MSMg01no174_j07.b1 PHD_FILE: MSMg01no174_j07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:45:29 2005
(318 letters)
>mm_chr4_36471587_36472304
Length = 718
Score = 524 bits (271), Expect = e-153
Identities = 308/329 (93%), Gaps = 16/329 (4%)
Strand = Plus / Plus
Query: 4 ggaattcaaatatgttttgaacttaaaataaagtaaaaagttgaagtatagagtatagca 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaaatatgttttgaacttaaaataaagtaaaaagttgaagtatagagtatagca 263
Query: 64 atagaactgttgtggctttacaggaaactgaaaccagattgcagatactgtgaaggtatc 123
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 264 atagacctgttgtggctttacaggaaactgaaaccagattgcagatactgtgaagttatc 323
Query: 124 tgttaatgcacaaatgcaagggaagctgttcagctataactcagcctatga-gtatgaaa 182
|||||||||| |||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 324 tgttaatgcagaaatgcaagggaagctgttcagctataactcagcctatgaag-atgaaa 382
Query: 183 caccaaaaggactctatctccaggaaatataaaaaataactatatatat----------- 231
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 caccaaaaggactctatctccaggaaatataaaaaataactatatatatatatatatata 442
Query: 232 ---gtaccaaactcccatctctttgcaacagatggagacaactatagaaaactactacca 288
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 443 tatgtaccaaactcccatctctttgcaacagatggagacaactatagaaaactacaacca 502
Query: 289 attaaagcacagttgtgggacctagtccc 317
|||||| ||||||||||||||||||||||
Sbjct: 503 attaaaacacagttgtgggacctagtccc 531
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space: 219081
Effective search space used: 219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no174_j07.g1 MSMg01no174_j07.g1 CHROMAT_FILE:
MSMg01no174_j07.g1 PHD_FILE: MSMg01no174_j07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:45:29 2005
(344 letters)
>mm_chr4_36619494_36620237
Length = 744
Score = 609 bits (315), Expect = e-179
Identities = 336/343 (97%)
Strand = Plus / Minus
Query: 1 tgaaaaacatttctataaagattctctgacattctaatttatcatatatataaactatag 60
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 488 tgaaaaacatttctataaagattctctgactttctaatttatcatttatataaactatag 429
Query: 61 atttgatatacacttcaacatcagagatggcatgttagatggagaagaatgtacagaaat 120
|| |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 428 atctgatatactcttcaacatcagagatggcatattagatggagaagaatgtacagaaat 369
Query: 121 taattgacaacattgtgcattccctctgcctccaccatgattattccttggagaaagttt 180
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 taattgacaaaattgtgcattccctctgcctccaccatgattattccttggagaaagttt 309
Query: 181 tgatctactattaatccgtataggttgttttaagcaatcttaaaacttaaattggaattt 240
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 tgatctactattaatctgtataggttgttttaagcaatcttaaaacttaaattggaattt 249
Query: 241 taatttagtttcaaataagctttataatagataatttttatatgttggtatttatctttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 taatttagtttcaaataagctttataatagataatttttatatgttggtatttatctttt 189
Query: 301 tattttaaaaatatttttaaatattttattaggtattttcctc 343
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 tattttaaaaatatttttaaatattttattaggtattttcctc 146
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 744
Length adjustment: 9
Effective length of query: 335
Effective length of database: 735
Effective search space: 246225
Effective search space used: 246225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
