BAC Information

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BAC

Clone NameMSMg01-174P07
Chromosome4 (Build37)
Map Location 54,420,089 - 54,522,929
singlet/doubletdoublet
Overlap genenone
Upstream geneSlc44a1, Fsd1l, LOC666483, Fcmd, Tal2, LOC435784, Tmem38b, LOC670124, LOC100041280
Downstream geneLOC666901, LOC100041303, LOC384018, EG666920, Zfp462, LOC670211, Rad23b, LOC666953, LOC100041348
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-174P07.T7 (MSMg01no174_p07.b1)MSMg01-174P07.TJ (MSMg01no174_p07.g1)
ACCAG370100AG370101
length731724
length of high quality
(start - end)		317 (36 - 352)651 (74 - 724)
definitionCHROMAT_FILE: MSMg01no174_p07.b1 PHD_FILE: MSMg01no174_p07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:45:56 2005CHROMAT_FILE: MSMg01no174_p07.g1 PHD_FILE: MSMg01no174_p07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:45:56 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,522,617 - 54,522,929)(54,420,089 - 54,420,739)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTAAT
TCTTCCACTTGTAGTAAATGTAGGCATTTCTTCTGAATAAAAGATTAATC
TTTCGAATAACATAGTGCAGAATTTGCTTTTCTTCATATAAATTTTCCAT
TTATTTGATTGGCACCCAAATTTTAGCAGTTGCTCATACATACACATTTT
ATATCATACACCAGATGCAACCTTGTACACACAAAACATAAAAAAAAAGT
CATCATGAGTTAGAGAAACATAAAGAGTCAGTCTATAACTTGAGACAGTA
GAAATTTATAAGTACTCAGAAGGTTCTCAGGAGGAGGGATTAGTATGGTC
AACATTTATTTTTTTCACCCCCCCCGCTCCCAATTTACAATTTGGTAGAG
CATGTATAGTATCCCATTAAATGAAAGAATTACACTTCTGGGCTATGTAA
GTATAGCTTATATCAAACTAACGCTCACATAGAGCTCAACTTCTTATAGT
TGACAAAGTAGAAAAAGTCCTGCCTGTTTGAAGGAAGAACAACCAAGACA
TCCAAGACCTCATAAATCTCACAGAGAAGGGAAGGCCCTGAGGTCAACTG
TATATACGCGTTACTACCTGTTCATCTTGCGTATTGAGAGATCTGGCTTC
TTTAAAAATCGAGTTACGCTATGAGAATACATTTCTTTTTTTCTTAATCC
AAGGTGCGGGATATGGGAATGCTTTCAACTG

AATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTATATAAGGACATGAGAGAAGCAGACT
TTTGCCCTGTGCCTGTTTGCCTTCACCTTGCTAGCACATCCATTTCTTCA
CTGGCATTGGAGCTTACTTCTTCGGGATTCCAGTGTATACAGAAGACTAA
CTGAGACATCCAGCCTTGTGAATTTGAATAACTACTGGATTCCGGAACTT
TTCATTCACAGCCAACCATTGTTGAATTAGATGACTTTAGCTTGTCATTC
CAATAAGTCCTGTACATATAGAATGAATATATATATATATATGTATATAT
GTATATACACATTCTATGAATTCTGTTACTCTAGAGAACTCTGACTAATA
CAAGCACATAGTATATTCTAAAGGTCCTTATATGTATGAGGGGATGGCCA
CCCCATAAAGAGATCATTCTTACTGTAGTTTTATCTTTTAAGCATCTAAC
ACATTCAAAGCCCTATGTGGTATTCTTTACATATTGTCTTTAAAGTTCAA
CATCAGGTATTAGACTCTATTTTGTACACAAAAGAGCTAGGACTTGGAGA
CATGAAACCAGTTCTTGGGAGTAGCAGAACCAAGCATAAAGCTTTTCTTT
AGTTATATTTTGACATCATTTTGAATCTAGATCATTGTCTCCAATCCACT
TACTATCTGGGTCAATTTTTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no174_p07.b1 MSMg01no174_p07.b1 CHROMAT_FILE:
MSMg01no174_p07.b1 PHD_FILE: MSMg01no174_p07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:45:56 2005
         (317 letters)



>mm_chr4_54522413_54523129
          Length = 717

 Score =  605 bits (313), Expect = e-178
 Identities = 313/313 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttaattcttccacttgtagtaaatgtaggcatttcttctgaataaaagattaat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 gaattcttaattcttccacttgtagtaaatgtaggcatttcttctgaataaaagattaat 458

                                                                       
Query: 65  ctttcgaataacatagtgcagaatttgcttttcttcatataaattttccatttatttgat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 ctttcgaataacatagtgcagaatttgcttttcttcatataaattttccatttatttgat 398

                                                                       
Query: 125 tggcacccaaattttagcagttgctcatacatacacattttatatcatacaccagatgca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 tggcacccaaattttagcagttgctcatacatacacattttatatcatacaccagatgca 338

                                                                       
Query: 185 accttgtacacacaaaacataaaaaaaaagtcatcatgagttagagaaacataaagagtc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 accttgtacacacaaaacataaaaaaaaagtcatcatgagttagagaaacataaagagtc 278

                                                                       
Query: 245 agtctataacttgagacagtagaaatttataagtactcagaaggttctcaggaggaggga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 agtctataacttgagacagtagaaatttataagtactcagaaggttctcaggaggaggga 218

                        
Query: 305 ttagtatggtcaa 317
           |||||||||||||
Sbjct: 217 ttagtatggtcaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no174_p07.g1 MSMg01no174_p07.g1 CHROMAT_FILE:
MSMg01no174_p07.g1 PHD_FILE: MSMg01no174_p07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:45:56 2005
         (651 letters)



>mm_chr4_54419889_54420939
          Length = 1051

 Score = 1243 bits (643), Expect = 0.0
 Identities = 649/651 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatataaggacatgagagaagcagacttttgccctgtgcctgtttgccttcaccttgcta 60
           |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct: 201 tatataaggacatgagagaagcagacttttgccctgtgcctgcttgctttcaccttgcta 260

                                                                       
Query: 61  gcacatccatttcttcactggcattggagcttacttcttcgggattccagtgtatacaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcacatccatttcttcactggcattggagcttacttcttcgggattccagtgtatacaga 320

                                                                       
Query: 121 agactaactgagacatccagccttgtgaatttgaataactactggattccggaacttttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agactaactgagacatccagccttgtgaatttgaataactactggattccggaacttttc 380

                                                                       
Query: 181 attcacagccaaccattgttgaattagatgactttagcttgtcattccaataagtcctgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attcacagccaaccattgttgaattagatgactttagcttgtcattccaataagtcctgt 440

                                                                       
Query: 241 acatatagaatgaatatatatatatatatgtatatatgtatatacacattctatgaattc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acatatagaatgaatatatatatatatatgtatatatgtatatacacattctatgaattc 500

                                                                       
Query: 301 tgttactctagagaactctgactaatacaagcacatagtatattctaaaggtccttatat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgttactctagagaactctgactaatacaagcacatagtatattctaaaggtccttatat 560

                                                                       
Query: 361 gtatgaggggatggccaccccataaagagatcattcttactgtagttttatcttttaagc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtatgaggggatggccaccccataaagagatcattcttactgtagttttatcttttaagc 620

                                                                       
Query: 421 atctaacacattcaaagccctatgtggtattctttacatattgtctttaaagttcaacat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atctaacacattcaaagccctatgtggtattctttacatattgtctttaaagttcaacat 680

                                                                       
Query: 481 caggtattagactctattttgtacacaaaagagctaggacttggagacatgaaaccagtt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 caggtattagactctattttgtacacaaaagagctaggacttggagacatgaaaccagtt 740

                                                                       
Query: 541 cttgggagtagcagaaccaagcataaagcttttctttagttatattttgacatcattttg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cttgggagtagcagaaccaagcataaagcttttctttagttatattttgacatcattttg 800

                                                              
Query: 601 aatctagatcattgtctccaatccacttactatctgggtcaattttttctt 651
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 aatctagatcattgtctccaatccacttactatctgggtcaattttttctt 851


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1051
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1041
Effective search space:   667281
Effective search space used:   667281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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