BAC Information

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BAC

Clone NameMSMg01-175D19
Chromosome4 (Build37)
Map Location 78,271,757 - 78,271,995
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039974, LOC100039996
Downstream geneLOC100040026, LOC100040036, LOC667922
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-175D19.T7 (MSMg01no175_d19.b1)MSMg01-175D19.TJ (MSMg01no175_d19.g1)
ACCAG370286AG370287
length697976
length of high quality
(start - end)
234 (127 - 360)---
definitionCHROMAT_FILE: MSMg01no175_d19.b1 PHD_FILE: MSMg01no175_d19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:16 2005CHROMAT_FILE: MSMg01no175_d19.g1 PHD_FILE: MSMg01no175_d19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATCC
GCGGAATTCTGAATTTTCCAATACTGCTTTATCAGAGTGATTATAAACTT
TTAGTTGAGTTACTAATTTTTCTCCTCAAAATGACAAGTGCTTTGGTGGC
ATAACCTGAATAAATCTGAGTTGATATAAATTATTATTTTCTTTTCTCCT
CGAGGTTGTACCATTTCAAGTTCTAGATGGTTCTGTTCATGTCAGAGAGA
TTCTTTAATATGCTATTGGTTGTTCATATATATATATATACATACATATA
TATATATAAAGAATTAAAGTATATTCCAATACTTTTTTATTAAGCATACA
TATATTCTTTGTTTTCTTGTTGCATTTCTTTGTCTTCATATGCTTCATAT
GTAGCATCCACAATATACCACATTAATAAATGTTTATATTTCTTACCATA
GAAATAGGCAAAACATGCTAGAAAAAACAAATCATTTAACTGTTGACTAA
TTCATATAAATAATAAAATGTTGTGAATAATAGGATTCTTTGATAATGAA
CTATTTACACTACTTATTACTATTATGATATATATAAATTTTCCTTTTCT
AATAATAAAGAAATTCATTTTTCTATACTAAAGAGTGAAAATTTCATGCC
ACCTCTTAGGAGTGTAGTCAGTTTGTTCATAGCGCTGTGTTTTAGAG
TGATATCGTGTGCAAGGAATTGGCCGACCGCCCTCGTTCCGAACAACACT
TCTAGGTCGACACCTATCAGATATGACTCCGCCGCCAATCTCCTTACATC
TATCTTATACACCCTCTTTGATTAGCATCTCTACCACAACTCGACCTTCT
CATAAAATCATACCTTCCTTTTCATTACCAAATCGTTCTACGTTTCGTCT
ACTATATGACTTCATATAAATTACCTCTCTCTAGCCTCTCTCTCGTCCTG
CAGTACTTCACTTCCAAATCGCTAATATCGGCTACATTACCATTCGCCTC
ATCTCCTTCACCCACTTTGTCTCACACTACACCTCATCTGTCACCCTTTA
CGCGCCCTGCCAAATACACACCTTTATATTCACATATGTAACAACACCCC
ACCCCAATATGTTTTTTTTAATATTCATCTGAATCTATCCCCCTTCTGCA
CGCCACCCATTTTTTTCTTTTTACCATACACCCCCCCCCTCCTCTTTCCG
ACATATTCTTATGTATGTCCTCGATTGATGTCCGCCCCCCCCTTACTTAC
AAAAAGAAAAACCCACCCTGTCCACCCCATCATATTAATTTTTGCCAACA
AAACCAACACCTCGTTCTCCAACACAAGACCACCGCTCTTATTGTTGTAC
CCCACACCTCTAAAAACCACCTATCGCCGCTCTACCGCACCCTTCTTCCC
TCTATCTCCGATGCAATATGGTTTACTATACTTCGTCCACCCTTGAACTA
AAATATTGGCTATCGCTCTCTATCTTTACTCCTCCCGGCCGCCCGCCATT
TCCCTACGCTGTTATTGGTATGTGCTCCCCCATTCACACACCTCTCATGC
TCACCGTCACAAATTTACGCTCTATTTAATTGTTTCCATTCAACACCCTA
CCCGACATGCGCTTTCTTTCTTCGCCCATTCCATCGAACGCTGCTCCAAC
CTCTGGTCGCGCATGTCCCATACTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no175_d19.b1 MSMg01no175_d19.b1 CHROMAT_FILE:
MSMg01no175_d19.b1 PHD_FILE: MSMg01no175_d19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:46:16 2005
         (234 letters)



>mm_chr4_78271647_78272280
          Length = 634

 Score =  369 bits (191), Expect = e-107
 Identities = 224/239 (93%), Gaps = 8/239 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaaatgacaagtgctttggtggcataacctgaataaatctgagttgatataaattatta 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 349 caaaatgacaagtgctttggtggcataacctgaataaatctgagttgatataaattttta 290

                                                                       
Query: 61  ttttcttttctcctcgaggttgtaccatttcaagttctagatggttctgttcatgtcaga 120
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 ttttcttttctcctcgaagttgtaccatttcaagttctagatggttctgttcatgtcaga 230

                                                                       
Query: 121 gagattctttaatatgctattggttgttcatatatatatatatacatacatatatatata 180
           |||||||||||||| |||||| |||||||||||||||||||||| ||| |||||||||||
Sbjct: 229 gagattctttaatacgctattagttgttcatatatatatatatatatatatatatatata 170

                                                                      
Query: 181 ta-a-------agaattaaagtatattccaatacttttttattaagcatacatatattc 231
           || |       ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 169 tatatatatatagaattaaagtatattccaatccttttttattaagcatacatatattc 111


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)