BAC Information

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BAC

Clone NameMSMg01-175F11
Chromosome4 (Build37)
Map Location 93,843,616 - 93,843,926
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC384125, Tusc1
Downstream gene5830433M19Rik, Plaa, LOC667250, Lrrc19, Ift74, Tek, 4930579C15Rik, LOC100039252, Mysm1, LOC100039265, LOC665029, Jun
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-175F11.T7 (MSMg01no175_f11.b1)MSMg01-175F11.TJ (MSMg01no175_f11.g1)
ACCAG370360AG370361
length733716
length of high quality
(start - end)
318 (43 - 360)288 (76 - 363)
definitionCHROMAT_FILE: MSMg01no175_f11.b1 PHD_FILE: MSMg01no175_f11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:24 2005CHROMAT_FILE: MSMg01no175_f11.g1 PHD_FILE: MSMg01no175_f11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTAATATGTTCCCATGTGGTGAGGATGCAGCCATGCAAGGACCATGCC
TTCAAATGTGCTGCCCTACCCCGACTTTCCTACCTCGGAGACTGAGTTCA
ATGGTCCCTTCATGAGCCCCCACCCCCACCCCTACTCCCTGTTTATCACT
CTCCTAGGATTATCACTGTGAAGTGTGATGGCTGACTGGCACATCTCATT
CCTTTACAAGAACAACTGTATGTCTGATTTACAATGTTGTGCTCCAGGAC
AGGGCACAAACCTGGCTAGCAGAGACCAGTACATGGCTAACAACTACATG
TTGAATGTTTTTCTGACTGACCCCACATAGAAGCATGTTGTATACCCATA
CGGTATTTGTACCGCGAAGTGTTCAGATCTGTGATAAAAGATATTCTGTG
TACTCAGAGAGAAAGGAGCACTGACAACAAGAAGGAGCTGGAGGTGTGGT
TCAGCTCCATATGCATAAGGATCTGAGTTGGCTTCCCGAATACTGGCATG
AAAGACGGTTGTGGAGTCTCTAATCTCAATGATGACGGGGAAGGAACAGG
TAGATGGTCAGCCAACCTAGTCCAGTCAATGCGCACCAAGTTTGGTGACC
GTATCTATGTATAGCAAACAAACTTTAATCTCATAAAGCCACAGAGTTAT
TGAGGATGGAACAGTGACTTTGACCTGTGTACN
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCATTACAGACATGAATGGCAGCCT
ACATTACATAATAGTAGAAAGTAGGTGGATTGTGGTTTTAGGAGGAACTG
AAGTATTGTATTATTCATGAAAGGGTTAGTATAATAGAATTCCCCTGGTG
CATGCTTTTCACTAGGCCCAGAGTAATAGCATAATTAGGTATTTACTAAA
GGACCCCTGGGTTTAACAATAGATTAGCATTACATCAGACCATTTACCTG
GCTCCCATGTTTAGTTGATCTTATATAGGGCTGTTCCTATCTCAGTTGTA
AACACTGCCTGTGTTCNTGCCACCCTCCCCCGCATGCATTTTCTTTGTTT
TGTGTAAAGAACCATTATACATCTCAAAGAACCTTGGCTGGTGTATTCAC
CTAGCTTTCTTGTTTTTCTTCTATCTTATAAGTCTGGTGCTCCTTTTGAG
AAATTACATTCAGATACAACACTCCCGTGTGTTCGTGTCTGTTTGTCACC
CTTTTTGCCAACTCCCTGCCCACCTGTACTGGGACTCTGATTCTCCCACA
GAGGGGCCGACTGAGGGCCGTCTGCGCGTGCGCGCGCGCACGCACACTCA
CACACACATACATACACACACACACACACATATACACACCGTACTTAATA
AAGTTCTTGCATTGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no175_f11.b1 MSMg01no175_f11.b1 CHROMAT_FILE:
MSMg01no175_f11.b1 PHD_FILE: MSMg01no175_f11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:46:24 2005
         (318 letters)



>mm_chr4_93843412_93844129
          Length = 718

 Score =  563 bits (291), Expect = e-165
 Identities = 306/315 (97%), Gaps = 8/315 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttaatatgttcccatgtggtgaggatgcagccatgcaaggaccatgccttcaaa 64
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttaataagttcccatgtggtgaggatgcagccatgcaaggaccatgccttcaaa 264

                                                                       
Query: 65  tgtgctgccctaccccg----actttcctacctcggagactgagttcaatggtcccttca 120
           ||||||||||||    |    |||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgtgctgcccta----ggaagactttcctacctcggagactgagttcaatggtcccttca 320

                                                                       
Query: 121 tgagcccccacccccacccctactccctgtttatcactctcctaggattatcactgtgaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgagcccccacccccacccctactccctgtttatcactctcctaggattatcactgtgaa 380

                                                                       
Query: 181 gtgtgatggctgactggcacatctcattcctttacaagaacaactgtatgtctgatttac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgtgatggctgactggcacatctcattcctttacaagaacaactgtatgtctgatttac 440

                                                                       
Query: 241 aatgttgtgctccaggacagggcacaaacctggctagcagagaccagtacatggctaaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatgttgtgctccaggacagggcacaaacctggctagcagagaccagtacatggctaaca 500

                          
Query: 301 actacatgttgaatg 315
           |||||||||||||||
Sbjct: 501 actacatgttgaatg 515


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)