Query= MSMg01no175_m21.b1 MSMg01no175_m21.b1 CHROMAT_FILE:
MSMg01no175_m21.b1 PHD_FILE: MSMg01no175_m21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:46:58 2005
(317 letters)
>mm_chr4_142926600_142927316
Length = 717
Score = 574 bits (297), Expect = e-168
Identities = 309/313 (98%)
Strand = Plus / Minus
Query: 5 gaattcatttccactggcagatggaaataaatagaacctactttccccataagctgccag 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 gaattcatttccactggcagatggaaataaatagaacctactttccccataagctgccag 458
Query: 65 ctcctcttgactctcggggctgcggcaccctgttatgtcccggtggtgatttatggtcgt 124
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 457 ctcctcttgactctcggggctgcagcaccctgttatgtcccggtggtgatttatggtcgt 398
Query: 125 tctactgagactgtcatattggggagctcgtcttggatgcatattactcactgggctgaa 184
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 tctactaagactgtcatattggggagctcgtcttggatgcatattactcactgggctgaa 338
Query: 185 ccctggtcagaaccagcaatgtgctgatgagaagtgtttcctggcttttcttttcatgca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 ccctggtcagaaccagcaatgtgctgatgagaagtgtttcctggcttttcttttcatgca 278
Query: 245 tgcatgcatacataactgtttggcgatttaaatatattcataacttgcataatattcctt 304
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 277 tgcatgcatacataactgtttggcgatttaaatataatcataacttgcataatattcctt 218
Query: 305 attgcacagtctg 317
|||||||| ||||
Sbjct: 217 attgcacattctg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space: 218064
Effective search space used: 218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no175_m21.g1 MSMg01no175_m21.g1 CHROMAT_FILE:
MSMg01no175_m21.g1 PHD_FILE: MSMg01no175_m21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:46:58 2005
(639 letters)
>mm_chr4_142771498_142772530
Length = 1033
Score = 1143 bits (591), Expect = 0.0
Identities = 626/643 (97%), Gaps = 10/643 (1%)
Strand = Plus / Plus
Query: 1 actatgtataccaaattgggcccaaactcagagatccacctatctcttcaagtgctggga 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 197 actatgtataccaaattgggcccaaactcagagatccacctgtctcttcaagtgctggga 256
Query: 61 ttaaaggcatgtgtaccaggcttggtggagcacgcctttaatcccagcactgggtgacaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 ttaaaggcatgtgtaccaggcttggtggagcacgcctttaatcccagcactgggtgacaa 316
Query: 121 gaggcaggagtatcactgtgagttcaagaccagactgttctacatatcaagttccagaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 gaggcaggagtatcactgtgagttcaagaccagactgttctacatatcaagttccagaca 376
Query: 181 aacagaaacatagaacagaaataccttgtctcaaaaacagcaacaaatgttaggtgccaa 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 377 aacagaaacatagaacagaaataccttgtctcaaaaacagcaacaaatgttaggcgacaa 436
Query: 241 accatag----caaacaaagaaaaacaagccacccaaactcaaaaccgcctgagtttcaa 296
|||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 accaaagcaaacaaacaaagaaaaacaagccacccaaactcaaaaccgcctgagtttcaa 496
Query: 297 tatttatatgtgtgtatatatatatatttcaagtccaacaattcccaccatcgttggctg 356
|||||||||| |||||||||||||||| |||||||||||| | ||||||||||||
Sbjct: 497 tatttatatg------tatatatatatttcaattccaacaattccaatcatcgttggctg 550
Query: 357 tcccctggctggcttggagtcagaaagcccaagagggcatctatagctgtatcacctctg 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 tcccctggctggcttggagtcagaaagcccaagagggcatctatagctgtatcacctctg 610
Query: 417 gggcaaggccgagctaccagtgcgcttgcttcagaagcgcagatactttctctgctatga 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 gggcaaggccgagctaccagtgcgcttgcttcagaagcgcagatactttctctgctatga 670
Query: 477 cttacatccttttcccaacaaatcctccaacatactttctaaaaatagaagtttcaaatt 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 cttacatccttttcccaacaaatcctccaacatactttctaaaaatagaagtttcaaatt 730
Query: 537 gcccccagcaaatagcctcctgtacttctaattagctaaaaatatcaataaacttaacag 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 gcccccagcaaatagcctcctgtacttctaattagctaaaaatatcaataaacttaacag 790
Query: 597 acatttctcacttctatatatgcgattcccattttaaaatgtt 639
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 acatttctcacttctatatatgcgattcccattttaaaatgtt 833
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1033
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1023
Effective search space: 643467
Effective search space used: 643467
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
