BAC Information

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BAC

Clone NameMSMg01-175N19
Chromosome4 (Build37)
Map Location 79,346,628 - 79,476,885
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040026, LOC100040036, LOC667922
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-175N19.T7 (MSMg01no175_n19.b1)MSMg01-175N19.TJ (MSMg01no175_n19.g1)
ACCAG370728AG370729
length713726
length of high quality
(start - end)
586 (128 - 713)191 (71 - 261)
definitionCHROMAT_FILE: MSMg01no175_n19.b1 PHD_FILE: MSMg01no175_n19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:47:02 2005CHROMAT_FILE: MSMg01no175_n19.g1 PHD_FILE: MSMg01no175_n19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:47:02 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,476,483 - 79,476,885)(79,346,628 - 79,346,818)
sequence
CTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTGTAGTGCACAAATGCTGATAATCATGTGAAGACCTAGCCTACA
TAAAGGAAAATGGGTTTTTGCCACGGTAGATTAATATCTTGCATGTAGAA
TGTTCTAAAATACATGGCAAATAAACAAACAATTGAGTTTTTCTAAGGAA
AAGAACTGTTATTAATGATGAAGAACAAATGACTATTAAGCATGAAACAG
GTTTCAGTCAAACTGGCCATTAGAGGAAGATGATCTTAGATTACATCTCA
CTGTGATCAGATGAGAATTGAACTCAGAATAAACTAACACATGCTGGCGA
TAACATTATGATATTAAAACCCCAATACACTGATGATTGAAATGAAATGT
AGTCCCGCAATGATGTCCACAAGTAGTTTTCCCAAATCAAAATGAAGATC
TTCCATATGACAAAGTTATACCACTTGAGTATTTAACAGAAGGTTATAAC
ATCACTATGTTATAGACATAATTGTGTATCTATGTTTATTGAAGTTCAGT
ATTATGGAACCAATCAAGGTGTCAAATATCAGAGTAATGTATAAAACAAT
GGATTTTTTATCATAATTTTTAATTTCAAAGAATGAATCTAATTGGAGGT
CATCAAATTAAGTGCATTAGTAATTCTTAGGCAGACAAATATTGTATGTC
TTCTCTTATTTGT
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCTATATAGAATGATGTTTATGGAAATATA
TTGAAGAGTATTTTTTCCAATAGAGTAAAATATCTGATAGTGAATAAAAT
CACATCTACATACAATATTGGGTCATTACTGTAAATGTTGTGAAATTTGT
ACAATGTTGCATTAATAGACTATCTACTTTTTAAGTAAATAATCTCTAAA
TATCTGTGTGGTAAAGCGCCCCCTCTGTCTATATGGGATCTTTATTAACT
TGTCAAGACCCAGACTCTATTATATACGAAATTCTAAGTAAATAATTGGC
CACATCCTTTTTATATCACCGTCCACTCCGTAAATAAATAGCAAATGACT
AATATTACCCGACGACAAGTTGTGGAAAAGAACTACAAAAATAATGTAGC
AATTTAGTATATTTCAATTGAGGGGATTAATGACAAACTTAGAAATGAGA
AATTTTCTGACAAAATATAGGTAAATTTTATTATTGAGAAATGTATACTA
TTTTGAGGCACAAAATGTAGGCTATATAATGCTTTGTGTTTTTTAACCTA
CAAAACGAATGTTGTAGGTTAAGCTACATTACAATTTTCATTGAAATTCC
CCTTAACAATAAAAGGAAATTATACCCTCGGAAGCGGTTAAGGGGAAAAA
AAGAGCCTGGCGTTCTAGCTAGTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no175_n19.b1 MSMg01no175_n19.b1 CHROMAT_FILE:
MSMg01no175_n19.b1 PHD_FILE: MSMg01no175_n19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:47:02 2005
         (586 letters)



>mm_chr4_79476483_79477468
          Length = 986

 Score =  671 bits (347), Expect = 0.0
 Identities = 389/403 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   agattaatatcttgcatgtagaatgttctaaaatacatggcaaataaacaaacaattgag 60
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 403 agattaatatcttgcatgtagaatgctctaaaatacatggcaaataaacaaacaattgag 344

                                                                       
Query: 61  tttttctaaggaaaagaactgttattaatgatgaagaacaaatgactattaagcatgaaa 120
           |||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct: 343 ttttgctaaggaaaagagctgttattaatgatgaaggacaaatgactattaagcatgaaa 284

                                                                       
Query: 121 caggtttcagtcaaactggccattagaggaagatgatcttagattacatctcactgtgat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 caggtttcagtcaaactggccattagaggaagatgatcttagattacatctcactgtgat 224

                                                                       
Query: 181 cagatgagaattgaactcagaataaactaacacatgctggcgataacattatgatattaa 240
            |||||||||||||||| ||||||||||||||||||||||| |||||||||||| |  ||
Sbjct: 223 tagatgagaattgaacttagaataaactaacacatgctggcaataacattatgagaagaa 164

                                                                       
Query: 241 aaccccaatacactgatgattgaaatgaaatgtagtcccgcaatgatgtccacaagtagt 300
           |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 163 aaccccaatacactgatgattgaaatgaaatgtagtcccgcaatgatgtcaataagtagt 104

                                                                       
Query: 301 tttcccaaatcaaaatgaagatcttccatatgacaaagttataccacttgagtatttaac 360
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103 tttgccaaatcaaaatgaagatcttccatatgacaaagttataccacttgagtatttaac 44

                                                      
Query: 361 agaaggttataacatcactatgttatagacataattgtgtatc 403
           ||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 43  agaaggttataacatcactatgttatagagataattgtgtatc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 986
Length adjustment: 10
Effective length of query: 576
Effective length of database: 976
Effective search space:   562176
Effective search space used:   562176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no175_n19.g1 MSMg01no175_n19.g1 CHROMAT_FILE:
MSMg01no175_n19.g1 PHD_FILE: MSMg01no175_n19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:47:02 2005
         (191 letters)



>mm_chr4_79346428_79347018
          Length = 591

 Score =  346 bits (179), Expect = e-100
 Identities = 188/191 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctatatagaatgatgtttatggaaatatattgaagagtattttttccaatagagtaaaa 60
           |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct: 201 tctatatagaatgatgtttatggaaatacattgaagagtattttttccaataaagtaaaa 260

                                                                       
Query: 61  tatctgatagtgaataaaatcacatctacatacaatattgggtcattactgtaaatgttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatctgatagtgaataaaatcacatctacatacaatattgggtcattactgtaaatgttg 320

                                                                       
Query: 121 tgaaatttgtacaatgttgcattaatagactatctactttttaagtaaataatctctaaa 180
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 321 tgaaatttgtacaatgttgcattaatagactatctactctttaagtaaataatctctaaa 380

                      
Query: 181 tatctgtgtgg 191
           |||||||||||
Sbjct: 381 tatctgtgtgg 391


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 191
Length of database: 591
Length adjustment: 8
Effective length of query: 183
Effective length of database: 583
Effective search space:   106689
Effective search space used:   106689
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)