Query= MSMg01no176_c23.b1 MSMg01no176_c23.b1 CHROMAT_FILE:
MSMg01no176_c23.b1 PHD_FILE: MSMg01no176_c23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:47:38 2005
(668 letters)
>mm_chr4_17561067_17562134
Length = 1068
Score = 895 bits (463), Expect = 0.0
Identities = 492/503 (97%), Gaps = 3/503 (0%)
Strand = Plus / Minus
Query: 166 tttcagcatgtacttcttggcatccacaacagtgtctggggttggtaaccttatatggga 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1068 tttcagcatgtacttcttggcatccacaacagtgtctggggttggtaaccttatatggga 1009
Query: 226 tgaatccctaggtgggatatgggatacttataagagaaggtaaaaaaaattatgataaac 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1008 tgaatccctaggtgggatatgggatacttataagagaaggtaaaaaaaattatgataaac 949
Query: 286 attgtgatggtttgtatattcttggactagggagtggtaccaattggatgtgtggccttg 345
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 948 attgtgatggtttgtatattcttggactagggagtggtgccaattggatgtgtggccttg 889
Query: 346 ttggaataggtctgacctggttggagtaggtatgtcactgtgggtgtgggcttaatactc 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 888 ttggaataggtctgacctggttggagtaggtatgtcactgtgggtgtgggcttaatactc 829
Query: 406 tcactctaggtgcctggaagtcagtcttctactatcagccatggagcttgttgggtgcaa 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 828 tcactctaggtgcctggaagtcagtcttctactatcagccatggagcttgttgggtgcaa 769
Query: 466 atgagtttactattcaatttagtatgtttaatagcctgtatatttttagtcctaaattgc 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 atgagtttactattcaatttagtatgtttaatagcctgtatatttttagtcctaaattgc 709
Query: 526 attgaattatccttaattttaacagctccaacccagactatggattcaatatttatttta 585
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 708 attgaattatccttaattttaacaactccaacccagactatggattcaatatttatttta 649
Query: 586 ttttatatatatatatatatatatatatatatatatatatatatatatatacacacatat 645
|||||| |||||||||||||||||||||||||||||| | | | | | ||||||||||
Sbjct: 648 ttttat---tatatatatatatatatatatatatatatacacacacacacacacacatat 592
Query: 646 atatgtatacgtgtgtgtgtgtg 668
|||||||||||||||||||||||
Sbjct: 591 atatgtatacgtgtgtgtgtgtg 569
Score = 58.7 bits (30), Expect = 1e-12
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 589 tatatatatatatatatatatatatatata 618
||||||||||||||||||||||||||||||
Sbjct: 613 tatatatatatatatatatatatatatata 642
Score = 58.7 bits (30), Expect = 1e-12
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 591 tatatatatatatatatatatatatatata 620
||||||||||||||||||||||||||||||
Sbjct: 613 tatatatatatatatatatatatatatata 642
Score = 58.7 bits (30), Expect = 1e-12
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 593 tatatatatatatatatatatatatatata 622
||||||||||||||||||||||||||||||
Sbjct: 613 tatatatatatatatatatatatatatata 642
Score = 58.7 bits (30), Expect = 1e-12
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 595 tatatatatatatatatatatatatatata 624
||||||||||||||||||||||||||||||
Sbjct: 613 tatatatatatatatatatatatatatata 642
Score = 58.7 bits (30), Expect = 1e-12
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 597 tatatatatatatatatatatatatatata 626
||||||||||||||||||||||||||||||
Sbjct: 613 tatatatatatatatatatatatatatata 642
Score = 58.7 bits (30), Expect = 1e-12
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 599 tatatatatatatatatatatatatatata 628
||||||||||||||||||||||||||||||
Sbjct: 613 tatatatatatatatatatatatatatata 642
Score = 58.7 bits (30), Expect = 1e-12
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 601 tatatatatatatatatatatatatatata 630
||||||||||||||||||||||||||||||
Sbjct: 613 tatatatatatatatatatatatatatata 642
Score = 58.7 bits (30), Expect = 1e-12
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 603 tatatatatatatatatatatatatatata 632
||||||||||||||||||||||||||||||
Sbjct: 613 tatatatatatatatatatatatatatata 642
Score = 58.7 bits (30), Expect = 1e-12
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 605 tatatatatatatatatatatatatatata 634
||||||||||||||||||||||||||||||
Sbjct: 613 tatatatatatatatatatatatatatata 642
Score = 58.7 bits (30), Expect = 1e-12
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 607 tatatatatatatatatatatatatatata 636
||||||||||||||||||||||||||||||
Sbjct: 613 tatatatatatatatatatatatatatata 642
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 71
Number of extensions: 26
Number of successful extensions: 26
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 11
Length of query: 668
Length of database: 1068
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1058
Effective search space: 696164
Effective search space used: 696164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no176_c23.g1 MSMg01no176_c23.g1 CHROMAT_FILE:
MSMg01no176_c23.g1 PHD_FILE: MSMg01no176_c23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:47:38 2005
(657 letters)
>mm_chr4_17398951_17400009
Length = 1059
Score = 1133 bits (586), Expect = 0.0
Identities = 631/648 (97%), Gaps = 6/648 (0%)
Strand = Plus / Plus
Query: 1 catcaaacatttcaaaattatgctgtttttcactaataatattttaggagaaatagtctt 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct: 201 catcaaacatttcaaaattatgctgtttttcattaataatattttaggagaaatactctt 260
Query: 61 taattcccatagtgaatatatactctaaatttgattgaaagtcttctagtacttatttac 120
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taattcccatagtgaa-atatactctaaatttgattgaaagtcttctagtacttatttac 319
Query: 121 taatacatgtactacatttatagaaatggtttatattttaattagtataaacatacttag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 taatacatgtactacatttatagaaatggtttatattttaattagtataaacatacttag 379
Query: 181 gatttctataatttgtgtttaatatgttgctctaaatacatatgagaaaacttcctgaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gatttctataatttgtgtttaatatgttgctctaaatacatatgagaaaacttcctgaag 439
Query: 241 atttgacttattttagaatgctgtgctgtgagctgcctatatctcagcttagacatagac 300
|||||||||||||||||| | ||||||||||||| ||||||| |||||||||||||||||
Sbjct: 440 atttgacttattttagaaggttgtgctgtgagcttcctatatttcagcttagacatagac 499
Query: 301 ctatcagctagtatcagatattctctacaagtttggatatcctacttgcttgaaggttga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ctatcagctagtatcagatattctctacaagtttggatatcctacttgcttgaaggttga 559
Query: 361 gataggaatgtctgctggtaagtct----attttaaataccacttacattcagtgagaac 416
||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct: 560 gataggaatgtctgctggtaagtctttctattttaaataccacttatattcagtgagaac 619
Query: 417 ctaatctgattttctcttggaatgaatttcatctccaatcatttctgagcaagctttgcc 476
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ctaatctgactttctcttggaatgaatttcatctccaatcatttctgagcaagctttgcc 679
Query: 477 tgtatctctcttggtgttaccatgtttctattatttctgcattcagaaacatgattccag 536
| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 680 tatatctctcttggtgttaccatgtttctattatttctggatttagaaacatgattccag 739
Query: 537 taagagcaaatgataattatgataaaagtgaaaaaaagtacagttaattagattctcatt 596
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 740 taagagcaaatgataattatgataaaagtgaaaaaa-gtacagttaattagattctcatt 798
Query: 597 tatagaacataaatgatctatttctatatacagataaatagccacaca 644
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 tatagaacataaatgatctatttctatatacagataaatagccacaca 846
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1059
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1049
Effective search space: 678703
Effective search space used: 678703
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
