Query= MSMg01no176_k18.b1 MSMg01no176_k18.b1 CHROMAT_FILE:
MSMg01no176_k18.b1 PHD_FILE: MSMg01no176_k18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:48:42 2005
(730 letters)
>mm_chr4_92135404_92136533
Length = 1130
Score = 1365 bits (706), Expect = 0.0
Identities = 724/730 (99%), Gaps = 1/730 (0%)
Strand = Plus / Plus
Query: 1 gctttccacaggaacgaatgttcctttctaccttgtaaggacaatctgatttcctcagtc 60
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 201 gctttccacaggaatgaatgttcctttctaccttggaaggacaatctgatttcctcagtc 260
Query: 61 aatgcgttcacatagactcaccctaaaatattcctaaaggacaaccaagaaaaatatggc 120
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatgcgttcacatagactctccctaaaatattcctaaaggacaaccaagaaaaatatggc 320
Query: 121 tcactaattaatcagataccttgtaagtcattcaattagacaaactacatggtcttttct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcactaattaatcagataccttgtaagtcattcaattagacaaactacatggtcttttct 380
Query: 181 tcccttgggattctggttaatgtacatttatagtaaatattatgcatttataataagtgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcccttgggattctggttaatgtacatttatagtaaatattatgcatttataataagtgt 440
Query: 241 gggatatgtaaatgtgccttatttaacacaaaatgtgttctctttaactcctgatttgag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gggatatgtaaatgtgccttatttaacacaaaatgtgttctctttaactcctgatttgag 500
Query: 301 tgaaataaggcactgctctgaatcttccaaattgcaaagaatatgaaatttaaacattag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgaaataaggcactgctctgaatcttccaaattgcaaagaatatgaaatttaaacattag 560
Query: 361 aattatgttctcttgccctcttgcctctctctcttgcatcatgctccccctctctctccc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aattatgttctcttgccctcttgcctctctctcttgcatcatgctccccctctctctccc 620
Query: 421 cattccctttacccccaccctccacatggtcatggccggcctctacttctctactctctc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cattccctttacccccaccctccacatggtcatggccggcctctacttctctactctctc 680
Query: 481 cttctctctacctttctctgcctctactacaaacttaactcccctccacaagacctgaat 540
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cttctctctacctttctctgc-tctactacaaacttaactcccctccacaagacctgaat 739
Query: 541 aaattctatcctatactaaaaaacaaacaaaaactttagatttgtcttaataaaataaaa 600
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 740 aaattctatcctatactaaaaaacaaacaaaaacattagatttgtcttaataaaataaaa 799
Query: 601 taatattttagatttatcttaaaaatattagatttatcataatatatttgctgttgtaaa 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 taatattttagatttatcttaaaaatattagatttatcataatatatttgctgttgtaaa 859
Query: 661 attgattttttctgaaatttctcatttacttatttgtatgtgtgttaatctttttatacc 720
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 860 attgattttttctgaattttctcatttacttatttgtatgtgtgttaatctttttatacc 919
Query: 721 tcccaattca 730
||||||||||
Sbjct: 920 tcccaattca 929
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 730
Length of database: 1130
Length adjustment: 10
Effective length of query: 720
Effective length of database: 1120
Effective search space: 806400
Effective search space used: 806400
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no176_k18.g1 MSMg01no176_k18.g1 CHROMAT_FILE:
MSMg01no176_k18.g1 PHD_FILE: MSMg01no176_k18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:48:43 2005
(610 letters)
>mm_chr4_92185024_92186033
Length = 1010
Score = 603 bits (312), Expect = e-176
Identities = 315/316 (99%)
Strand = Plus / Minus
Query: 295 gggacattatttgtgataagcagaagctgcaaataacccagtgtcccacagtggaagaat 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1010 gggacattatttgtgataagcagaagctgcaaataacccagtgtcccacagtggaagaat 951
Query: 355 ggatacagaaaatgtggttcatttacagaatgtaatactactcagctattaaaaaggaag 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 950 ggatacagaaaatgtggttcatttacagaatgtaatactactcagctattaaaaaggaag 891
Query: 415 acatcctgagttttacaggcaaatgaatggaactaaaaaatctcatcctgagggaggtga 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 890 acatcctgagttttacaggcaaatgaatggaactaaaaaatctcatcctgagggaggtga 831
Query: 475 ctcagacccaaaaggtcatgtgtgatgattttctaggaataaattgattataaaggtcaa 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 830 ctcagacccaaaaggtcatgtgtgatgattttctaggaataaattgattataaaggtcaa 771
Query: 535 catgatctccatttgttgatcctaacacattgcaaagaaaacaaaacaaaactaacttaa 594
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 catgatctccatttgatgatcctaacacattgcaaagaaaacaaaacaaaactaacttaa 711
Query: 595 gtataaggtggactgc 610
||||||||||||||||
Sbjct: 710 gtataaggtggactgc 695
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1010
Length adjustment: 10
Effective length of query: 600
Effective length of database: 1000
Effective search space: 600000
Effective search space used: 600000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
