BAC Information

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BAC

Clone NameMSMg01-176O13
Chromosome4 (Build37)
Map Location 133,686,059 - 133,686,702
singlet/doubletsinglet
Overlap geneCcdc21
Upstream geneWasf2, Gpr3, Cd164l2, Fcnc-ps, Map3k6, Sytl1, D4Ertd196e, LOC100041990, LOC100042018, Wdtc1, Slc9a1, 4732473B16Rik, 2300002D11Rik, 1810019J16Rik, Nudc, Nr0b2, Gpatch3, Atpbd1b, Sfn, Zdhhc18, LOC545683, Pigv, Arid1a, Rps6ka1, 4930429E23Rik, LOC100042151, Hmgn2, Dhdds, Lin28, Aim1l, Cd52, Ubxd5, Sh3bgrl3
Downstream geneEG665186, Catsper4, Cnksr1, Zfp593, Grrp1, Pdik1l, Trim63, Slc30a2, Extl1, LOC434166, Pafah2, Stmn1, Paqr7, 2610002D18Rik, 2410166I05Rik, Sepn1, Man1c1, Ldlrap1, Tmem57, Rhd, Tmem50a, D4Wsu53e, Syf2, Runx3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-176O13.T7 (MSMg01no176_o13.b1)MSMg01-176O13.TJ (MSMg01no176_o13.g1)
ACCAG371465AG371466
length1,1961,178
length of high quality
(start - end)
645 (138 - 782)275 (131 - 405)
definitionCHROMAT_FILE: MSMg01no176_o13.b1 PHD_FILE: MSMg01no176_o13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:49:15 2005CHROMAT_FILE: MSMg01no176_o13.g1 PHD_FILE: MSMg01no176_o13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:49:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCGGCCCCTTNNNNAGCAGTCGGCGCTAXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTCAGGCCCCTTGTATCCCTTTAAAAGACCCCTAGNTGGC
TTTCTGGGTTTTCTCAGCCTTTTGATTCCTCAGGGNTGTTGTTCCCACAG
AGGCCTCAGGGTTATCCACCTCTCAGCAGAGCCCCTACTATGATCACTGA
CTTGGGGACCATGGCAGGGCTCCTCGGCCTGCCTGCTGGGCCATCTTTTA
CAGGAAACTCTTCCTAGCTACCCATTGTCTGTCCCTAGAACCTTGGGCAT
GTGGGCATGTGCTTGGGTCCGCTATGTCGTCTAGGAGTACAGACTCCTCT
GTGGTTGCCTCGTGGTTCCCGGGTTGGACATGAGTTTCCCCCGTAAGAGC
ACAGGGTGTTTGTGGCTGCTCAGTCCTTCCTAAGGCTGGGCGCTGTCGCT
GTCCTCTGAACTGTGCCTCTCATTTGGGGTTAGGAGGGTTCCCTTTTCCT
GCTCTAACCTTGACAGTTCGGAGCACCTAAGATAAAAAAAAAAGTGTTGA
GTGTTTTCTGGTGTTTTGTGTTTCTCTAAGGCCTTTGAGCCTTAGCTTTC
TGGTTTTTCTTGCCTCCCAATTTAGGGATCGTCTCAGTTGTATCTGGTTA
TTTGGCCAGCCCTCAACCTCCTCTAGTTTGGATCCAAGGCCCCTGCATGT
ATGAGGAGTAAAGTAGTTGTGGGGGTGCAGACAGGACTTCTGCTAAGCCT
TGGGGCTGTTAACAGCACCATGGACCTCCAGGGCCTGAGGGGCCGCTTTG
CCAGTGTTTTAACAAGTTTATGTTTTTCTTATGGAGTGGCTTACCTTTCA
GAGTAATCACACCCAGCTGACCATTCCCCTCAGCCTCCGGGCTGCTGCCT
CCTTAAAACAGAGCTTCCCTGGTTGGTTTCCACCCTGGTATCGGGAGCCC
AGCCTCCATGCTCCGGCGTATTTTTCTTCCGAAAGTTTATAAAGTTTTTT
TAATGAATCCTTTGTTAAACCCAACGGGTTTGGATTGGCCCATTTTGGAT
TCAGAAATAAAAAATTTTAAATAAACCCTCCGGTTTTCTTAAGTTCTTCC
CAGAGTATCCCCGTGACATCCTGCTTGTGGAATTTTTTTTTTAGCGGAGT
TTTATTCGATTCCCCGGGGGGGAGGGGTTATATCTTCTCCCTTTTT
CCGGATCTTTANNNACAGAAGGNAGGCGTGXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCTATAAAGAGAAATTCATTT
TATTAGCTCGTCATTATTTTCCTTTTCAATTTTCTTCTTCCCTCCTTCCT
TTCTTTTCTTTCTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTGGG
TTTTCGAGACAGGGTTTCTCTGGACAGCCCTGGCTGTCCTGGAACTCACT
CTGGAAACCAGGCTGGTCTCAAACTCAGAAATCCACCTGGCTCTGGCTCC
CGAGTGGTGGGATTAAAGGCGTGCACCACCACACCCGGGGATTTTCTTTT
TTTTTTTTTTTTTTTTAAGGAGGTATTTATTTTATGGGCCCTGGGGTTTT
GCCTGCATATTTTTTTGAAGGTGCCCGATCCTCTAGAATTGGAGCTACAG
ACAGTTGTAAGCTGCCATGTGGGCGCTGGGAATTGAACTCAGCCCCTCTG
GAAGAGCAGCCAGTGCTCTTAACCACTGAACCATCTCTGCAGCCCTCTTA
TCATCATCATTAGCGTACGTGGGACATAAGGACATGCATGTGAAGTCAGA
GGATAACCTTGTGATGCCACCTCTGCAGAATGAACTTGGGTTGGGAGGCT
CTGCGCAGTGTAATAACTTTGCCAGTTGAGACTTCTCTCTTTAAATCTGC
TTCCTCCTCGTAAGTGTGGCGAAGATTGTCATGAGTCATCATATCTGACC
ATCATTCATATTATAGGTTTCGATAAAGCTGCTATTTCTTCTGGTTAAGA
AACAGTATTATCTCACCCCTTTACCTTTTGCCTAGAATTCTTTCATTTTT
GGGTGCTTAAANNAAATGTAAATTTTGCTGTACTCCAATTTTATAATGAT
CAATTTTTTTTTTCTTGAGTATATATTAAAAACTATTTTCTATATAATCT
ATTTTTCATGTTTCGATGTTCTTTGTATTTTATATATTTATTATTTTGTA
TAATAATATGTTTCATAATTTTTTCTAAGTCTTTTACTTTATTATTATTA
TTATTATTTTAGGTCATTGATCATACTTTTTATTTCNCTCTTCTTACTAT
TTGTTATAATATTTTTATATTATCATTATTATATATTTATTCTTCTTACA
TACATTATTACTATAATTATATCTCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no176_o13.b1 MSMg01no176_o13.b1 CHROMAT_FILE:
MSMg01no176_o13.b1 PHD_FILE: MSMg01no176_o13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:49:15 2005
         (645 letters)



>mm_chr4_133685859_133686902
          Length = 1044

 Score = 1208 bits (625), Expect = 0.0
 Identities = 640/645 (99%), Gaps = 1/645 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gttgttcccacagaggcctcagggttatccacctctcagcagagcccctactatgatcac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844 gttgttcccacagaggcctcagggttatccacctctcagcagagcccctactatgatcac 785

                                                                       
Query: 61  tgacttggggaccatggcagggctcctcggcctgcctgctgggccatcttttacaggaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 tgacttggggaccatggcagggctcctcggcctgcctgctgggccatcttttacaggaaa 725

                                                                       
Query: 121 ctcttcctagctacccattgtctgtccctagaaccttgggcatgtgggcatgtgcttggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 ctcttcctagctacccattgtctgtccctagaaccttgggcatgtgggcatgtgcttggg 665

                                                                       
Query: 181 tccgctatgtcgtctaggagtacagactcctctgtggttgcctcgtggttcccgggttgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 tccgctatgtcgtctaggagtacagactcctctgtggttgcctcgtggttcccgggttgg 605

                                                                       
Query: 241 acatgagtttcccccgtaagagcacagggtgtttgtggctgctcagtccttcctaaggct 300
           |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||
Sbjct: 604 acatgagtttcccccgtaagagcacagggtggctgtggctgctcagtccttcctaaggct 545

                                                                       
Query: 301 gggcgctgtcgctgtcctctgaactgtgcctctcatttggggttaggagggttccctttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 gggcgctgtcgctgtcctctgaactgtgcctctcatttggggttaggagggttccctttt 485

                                                                       
Query: 361 cctgctctaaccttgacagttcggagcacctaagataaaaaaaaaagtgttgagtgtttt 420
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 484 cctgctctaaccttgacagttcggagcacctaagat-aaaaaaaaagtgttgagtgtttt 426

                                                                       
Query: 421 ctggtgttttgtgtttctctaaggcctttgagccttagctttctggtttttcttgcctcc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 ctggtgttttgtgtttctctaaggcctttgagccttagctttctggtttttcttgcctcc 366

                                                                       
Query: 481 caatttagggatcgtctcagttgtatctggttatttggccagccctcaacctcctctagt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 caatttagggatcgtctcagttgtatctggttatttggccagccctcaacctcctctagt 306

                                                                       
Query: 541 ttggatccaaggcccctgcatgtatgaggagtaaagtagttgtgggggtgcagacaggac 600
           |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ttggatccaagggccctgtatgtatgaggagtaaagtagttgtgggggtgcagacaggac 246

                                                        
Query: 601 ttctgctaagccttggggctgttaacagcaccatggacctccagg 645
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ttctgctaagccttggggctgttaacagcaccatggacctccagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1044
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1034
Effective search space:   656590
Effective search space used:   656590
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)