BAC Information

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BAC

Clone NameMSMg01-177E23
Chromosome4 (Build37)
Map Location 42,165,777 - 42,166,437
singlet/doubletsinglet
Overlap genenone
Upstream geneUbap2, Wdr40a, Ubap1, Kif24, Nudt2, AI464131, 1110017D15Rik, 1700066J24Rik, 2310028H24Rik, Dnaic1, 2310040A07Rik, LOC100042420, Cntfr, 2810432D09Rik, Dctn3, OTTMUSG00000006683, Oprs1, Galt, Il11ra1, Ccl27, LOC100039789, LOC623085, LOC100042466, LOC100042472, LOC100042493, Ccl19-ps1, LOC621580, LOC545611, LOC100042524, LOC100042519, LOC100039817, LOC100042536, LOC100039824, LOC100042539, LOC100042544, LOC100039848, LOC100039863, LOC100042555, 1700045I11Rik, LOC100039894, LOC100039909, EG545605
Downstream geneLOC674214, LOC100038965, LOC100039053, LOC100039193, LOC100039374, LOC100039930, LOC100038993, LOC100039939, Ccl19-ps3, Ccl21c, LOC100039323, LOC665845, LOC100039973, LOC100039986, 4933409K07Rik, LOC100039344, LOC100039995, EG623054, Ccl19-ps2, LOC100039331, LOC100039131, LOC100040035, LOC100040048, Il11ra2, LOC665962, LOC545614, 1700008B15Rik, Ccl19, Ccl21b, LOC100039205, LOC433698, BC049635, N28178, Dnajb5, 1700022I11Rik, Vcp, Fancg, Pigo, Stoml2, B230312A22Rik, Unc13b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-177E23.T7 (MSMg01no177_e23.b1)MSMg01-177E23.TJ (MSMg01no177_e23.g1)
ACCAG371734AG371735
length602712
length of high quality
(start - end)		49 (81 - 129)624 (77 - 700)
definitionCHROMAT_FILE: MSMg01no177_e23.b1 PHD_FILE: MSMg01no177_e23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:49:51 2005CHROMAT_FILE: MSMg01no177_e23.g1 PHD_FILE: MSMg01no177_e23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:49:51 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TTTCCCAAAATAANANNNTTCATAATTGCGGCGCTAATACGATCACTCTA
AGAGAGGATCCGCGGAATTCCTTTCAAGCCATTGGACCTGGTATTTTCTT
AGTTTGGGTATTTGGCAATTGTTACTCCNTTATTCCGTGGTTCCCTCACG
GTGGGGTGGGTGAAAAAGGCATTCGCGGAAAGGGGGTTTCCCCCCTCCCG
CGGATATTTGGAAAAATTTGGGAAATTTGGGAATTTTACCTTTTTTCCCC
CGCGGGTTTGGAAAAAAAAAATTTTTAAAGAGAGACCCCCCCCGGTTTTT
TGTTTTTAAAAAAGGGGGGGGGGCCCTCGGGGGTTGTGGGTTTTTGGGTT
ATAAAAAAAAAAAGTTTCTTCGGGGGGAGCTTTTTTTTTTTTTTTTAAAA
AAACTTTTTTTTTATTAAAAAAGGGGTTTTTTTATAAAAAAATCCCCCCC
CCCCGCCGGATGAGAAAAAAAAAAAAACTTCATTTTNTTNNNNNNTNTTN
TTTTTTTGTTGTTACCCCCCCCCTTTCTCCGCGAGAAAGGGGGGGGTTTC
TTTTTCTTTTTTTTATTAAAAAAAAAAATAAATTTAGGTTGTTCCCCCCC
CN

NCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGGGAGATGGCTCAGTCACTAAAG
GACTTGGTGCGCAAGGATGAGGGCTTGAGTTTGAATCCTCAGAACCCAAC
ATAAAGCCAGGCAGAGTAGCACACATCTGTAATCCCAGCGTGCCTGCAGC
AAGATGGGAGGCAGAGTCAGGAGAATCTCTGGACACCTCGGGTCATCAAG
CTTAGCATGTGCTATAGAGAACAAAAGAAAGTGCCTCAGACTGGGTGCAA
GGTGAGGCCCTCAGCCTCAGGTGGTCCTCAAACCTCCACAGCTACACAGG
GCCTCTCACTCACACACATGAAGGTGGCCGAGCGACATGGACACATGCAC
AGAGAGAGAGAGAGAGAGAGACAGAGACAGAGACAGAGACAGAGACAGAG
AGACGGGGTTTTCAAGAGTAATTCACCAACTACTCTAACTACTCTACATC
AACATTTGGTTAGACTCTGGAGTTCACTCCTAGCATGGCGTGCTGCTGTA
CATGACCCAGACCTTTCAGGAGCTCTTCCTCCGGGCCCTCTAGAAGAGCA
CTTCAAAATTGTGTGGAAGAAACTTCTGGCAACTGAACATAGGTAGATGG
AGGAGAGTAAGCTCTTTATATCATGCCTGTTAGGTGCTGGGCTGTAGAGA
ATAGAGCCTACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no177_e23.g1 MSMg01no177_e23.g1 CHROMAT_FILE:
MSMg01no177_e23.g1 PHD_FILE: MSMg01no177_e23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:49:51 2005
         (624 letters)



>mm_chr4_42165614_42166637
          Length = 1024

 Score = 1079 bits (558), Expect = 0.0
 Identities = 618/662 (93%), Gaps = 39/662 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   agggagatggctcagtcactaaaggacttggtgcgcaaggatgagggcttgagtttgaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 agggagatggctcagtcactaaaggacttggtgcgcaaggatgagggcttgagtttgaat 223

                                                                       
Query: 61  cctcagaacccaacataaagccaggcagagtagcacacatctgtaatcccagcgtgcctg 120
           ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 cctcagaaccc-acctaaagccaggcagagtagcacacatctgtaatcccagcgtgcctg 282

                                                                       
Query: 121 cagcaagatgggaggcagagtcaggagaatctctggacacctcgggtcatcaagcttagc 180
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 283 cagcaagatgggaggcagagtcaggagaatctctggacgcctcgggtcatcaagcttagc 342

                                                                       
Query: 181 atgtgctatagagaacaaaagaaagtgcctcagactgggtgcaaggtgaggccctcagcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 atgtgctatagagaacaaaagaaagtgcctcagactgggtgcaaggtgaggccctcagcc 402

                                                                       
Query: 241 tcaggtggtcctcaaacctccacagctacacagggcctctcactcacacacatgaaggtg 300
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 403 tcaggtggtcctcaaacctccacagctacacagggcctcccactcacacacatgaaggtg 462

                                                                       
Query: 301 gccgagcgacatggacacatgcac--------------agagagagagagagagagagac 346
           ||||||||||||||||||||||||              ||||||||||||||||||||||
Sbjct: 463 gccgagcgacatggacacatgcacagagagagagagagagagagagagagagagagagac 522

                                                                       
Query: 347 agagac------------------------agagacagagacagagacagagagacgggg 382
           ||||||                        |||||||||||||||||||||||||||| |
Sbjct: 523 agagacagagacagagagagagacagagatagagacagagacagagacagagagacggag 582

                                                                       
Query: 383 ttttcaagagtaattcaccaactactctaactactctacatcaacatttggttagactct 442
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 ttttcaagagtaattcaccaactactctaactactctacatcaacatttggttagactct 642

                                                                       
Query: 443 ggagttcactcctagcatggcgtgctgctgtacatgacccagacctttcaggagctcttc 502
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 ggagttcactcctagcatggcgtgctgctgtacatgacccagacctttcaggagctcttc 702

                                                                       
Query: 503 ctccgggccctctagaagagcacttcaaaattgtgtggaagaaacttctggcaactgaac 562
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 ctccgggccctctagaagagcacttcaaaattgtgtggaagaaacttctggcaactgaac 762

                                                                       
Query: 563 ataggtagatggaggagagtaagctctttatatcatgcctgttaggtgctgggctgtaga 622
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 ataggtagatggaggagggtaagctctttatatcatgcctgttaggtgctgggctgtaga 822

             
Query: 623 ga 624
           ||
Sbjct: 823 ga 824


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1024
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1014
Effective search space:   622596
Effective search space used:   622596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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