BAC Information

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BAC

Clone NameMSMg01-177K15
Chromosome4 (Build37)
Map Location 71,682,557 - 71,853,342
singlet/doubletdoublet
Overlap geneTle1
Upstream geneLOC100039565, LOC100039979, LOC667638, EG667649
Downstream geneAldoa-ps2, EG384113, LOC667713, LOC100039698
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-177K15.T7 (MSMg01no177_k15.b1)MSMg01-177K15.TJ (MSMg01no177_k15.g1)
ACCAG371986AG371987
length734706
length of high quality
(start - end)		219 (74 - 292)627 (80 - 706)
definitionCHROMAT_FILE: MSMg01no177_k15.b1 PHD_FILE: MSMg01no177_k15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:50:16 2005CHROMAT_FILE: MSMg01no177_k15.g1 PHD_FILE: MSMg01no177_k15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:50:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,853,124 - 71,853,342)(71,682,557 - 71,683,183)
sequence
NCCATCATXXXXXXXXXXXXXXXXXXXXXXXXTTCGGAGCGCGGATCGCG
GAATTCTCTTACTTAGCTAGGACATACTTCTGTGGAAAACCACTCCCCGC
AACCCCACATCCATGCCCTGAAACTTTGTAGTACTTGGGATGGAACCCAA
GGCCTCACACATTCTTAGGCAAGTATTTTACATACCCAGCCCAACTCGTT
ATTTTAAAGATTGCTGGGGTATGTGTGTTAAGAGGCTAAGGGTTTGTGGG
TGCATAAGTAGGAGAAAGGTTTTCTGTTTTTTCTGGGGCAGGGCATGACA
GGACTTTTACCGTCCGATTACAGAACGACCCANCGAGCCCGGGAAGGATT
TTTTCCCCCCCCCACTAAGAGTGATAGGTTCAAAAATTCTCAACTTATGC
ACTTTTTGCCCCCAATTTTTTACGATTCTTCCATTACCTAGTAACCTGTG
TCTTTACACTAATATTCCACCCTTTACGTTTCAAATATGACATTGTCTAT
TCATTTGACCCTTCTTTGTGGCAAACCCACTTATTATCCCCCTCCCTCCC
CTTTATCTTGTTTCTTTTTTCTAGAGCATTATAAATAGTTAAAGGGTACG
CTGGCCTGCCGCGCCGAATTCTTTCTTAATTACTAACACTCCGACAACAA
CCTCGTTTTTTTTTTTTTTTTTCCCACCGCGATTCAAGTCGTCCAGACCG
TCTCACACCAACCCACAGAATATATACCCCGCAN

NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGATTAGCTCTGTACCCCA
TTTTTAATAGGATTATTTGGTTCTCTGGAGTCTTACTTCTTGAGTTCTTT
ATATATGTTGGATATTAGGCCTCTATAGGGTTGGTAAAGATCTTTTCCCA
ACTTGTTGGTTGCCATTTTGTCCTATTGATAGTGTCTTGATCGTTGACAA
AGGAGCTAAAACCATCCAGTGGCAAAAGGACAGCATTTTCAATGAATGGT
ACTGGTTCAACTAATAGTTAACATGCAGAAGAATGCAAATTGATCCATTC
TTATCTCCTTGTACAAAGTTCAAGTCCAAGTGGATCAAGGATCTCCACAT
AAAAACAGATAAACTGATACTAATAGAAAAGAAAGTGGGGAAAGCCTCAA
GCACATGGACACAGGGAAATTTTTCCTGAACAGAATACCAATAGCTTATG
CTCTAAGATCAAGCATTGACAAATGGGACCTCAGAAAATTACAAAGCTTC
TGTAAGACACTAAGCAATTTTCAAAAATGCTACAGGACCAGGAATGGCAC
TCAGTGATCTTCACATGGATCCTGGATTTCATCCCTAGTCCATAAATTTA
AGAAAGTGGGGAGAGAGGGGGAATTATTTTGGCAAAATAAAGATGTTTGA
TTCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no177_k15.b1 MSMg01no177_k15.b1 CHROMAT_FILE:
MSMg01no177_k15.b1 PHD_FILE: MSMg01no177_k15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:50:16 2005
         (219 letters)



>mm_chr4_71852805_71853423
          Length = 619

 Score =  393 bits (203), Expect = e-114
 Identities = 215/219 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   atacttctgtggaaaaccactccccgcaaccccacatccatgccctgaaactttgtagta 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 538 atacttctgtggaaaaccactccccgcaaccccacatccatgccttgaaactttgtagta 479

                                                                       
Query: 61  cttgggatggaacccaaggcctcacacattcttaggcaagtattttacatacccagccca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 cttgggatggaacccaaggcctcacacattcttaggcaagtattttacatacccagccca 419

                                                                       
Query: 121 actcgttattttaaagattgctggggtatgtgtgttaagaggctaagggtttgtgggtgc 180
           ||||||||||||||||||||||||||||||||||||| ||||||||||||  ||||||||
Sbjct: 418 actcgttattttaaagattgctggggtatgtgtgttaggaggctaagggtaggtgggtgc 359

                                                  
Query: 181 ataagtaggagaaaggttttctgttttttctggggcagg 219
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ataagtaggagaaaggttttctgttttttctggggcagg 320


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 219
Length of database: 619
Length adjustment: 9
Effective length of query: 210
Effective length of database: 610
Effective search space:   128100
Effective search space used:   128100
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no177_k15.g1 MSMg01no177_k15.g1 CHROMAT_FILE:
MSMg01no177_k15.g1 PHD_FILE: MSMg01no177_k15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:50:16 2005
         (627 letters)



>mm_chr4_71682357_71683383
          Length = 1027

 Score = 1166 bits (603), Expect = 0.0
 Identities = 621/627 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgattagctctgtaccccatttttaataggattatttggttctctggagtcttacttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgattagctctgtaccccatttttaataggattatttggttctctggagtcttacttc 260

                                                                       
Query: 61  ttgagttctttatatatgttggatattaggcctctatagggttggtaaagatcttttccc 120
           ||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 261 ttgagttctttgtatatgttggatactgggcctctatagggttggtaaagatcttttccc 320

                                                                       
Query: 121 aacttgttggttgccattttgtcctattgatagtgtcttgatcgttgacaaaggagctaa 180
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacttgttggttgtcattttgtcctattgatagtgtcttgatcgttgacaaaggagctaa 380

                                                                       
Query: 181 aaccatccagtggcaaaaggacagcattttcaatgaatggtactggttcaactaatagtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaccatccagtggcaaaaggacagcattttcaatgaatggtactggttcaactaatagtt 440

                                                                       
Query: 241 aacatgcagaagaatgcaaattgatccattcttatctccttgtacaaagttcaagtccaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aacatgcagaagaatgcaaattgatccattcttatctccttgtacaaagttcaagtccaa 500

                                                                       
Query: 301 gtggatcaaggatctccacataaaaacagataaactgatactaatagaaaagaaagtggg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtggatcaaggatctccacataaaaacagataaactgatactaatagaaaagaaagtggg 560

                                                                       
Query: 361 gaaagcctcaagcacatggacacagggaaatttttcctgaacagaataccaatagcttat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaaagcctcaagcacatggacacagggaaatttttcctgaacagaataccaatagcttat 620

                                                                       
Query: 421 gctctaagatcaagcattgacaaatgggacctcagaaaattacaaagcttctgtaagaca 480
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 621 gctctaagatcaagcattgacaaatgggacctctgaaaattacaaagcttctgtaagaca 680

                                                                       
Query: 481 ctaagcaattttcaaaaatgctacaggaccaggaatggcactcagtgatcttcacatgga 540
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 681 ctaagcaattttcaaaaatgctacaggaccaggaatggcactcagtgagcttcacatgga 740

                                                                       
Query: 541 tcctggatttcatccctagtccataaatttaagaaagtggggagagagggggaattattt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tcctggatttcatccctagtccataaatttaagaaagtggggagagagggggaattattt 800

                                      
Query: 601 tggcaaaataaagatgtttgattcttc 627
           |||||||||||||||||||||||||||
Sbjct: 801 tggcaaaataaagatgtttgattcttc 827


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1027
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1017
Effective search space:   627489
Effective search space used:   627489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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