Query= MSMg01no178_d10.b1 MSMg01no178_d10.b1 CHROMAT_FILE:
MSMg01no178_d10.b1 PHD_FILE: MSMg01no178_d10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:50:57 2005
(660 letters)
>mm_chr4_34839394_34840455
Length = 1062
Score = 978 bits (506), Expect = 0.0
Identities = 540/564 (95%), Gaps = 22/564 (3%)
Strand = Plus / Plus
Query: 119 aaagaaatacttgctgcacaaacctgagaaccggagcttgatgccccaaactcacagaac 178
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 299 aaagaaatacttgctgcacaaacctgagaaccagagcttgatgccccaaactcacagaac 358
Query: 179 ccacataaggtggaaggagcagaccaacttgcctccacatactcacagtagaacttgtga 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 ccacataaggtggaaggagcagaccaacttgcctccacatactcacagtagaacttgtga 418
Query: 239 gtcacacacacacacacacacacacacacac--------------cataggcacacacca 284
||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 419 gtcacacacacacacacacacacacacacacacacacacacacaccataggcacacacca 478
Query: 285 aaacataaaataactt------taaaaaaaataaattctaaggttctgaagagcttccac 338
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 479 aaacataaaataacttaaaacttaaaaaaaataaattctaaggttctgaagagcttccac 538
Query: 339 tcaacaaagtaaaattaaagtactttttaaagagagaaaagaatcatgccttcacttaat 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 tcaacaaagtaaaattaaagtactttttaaagagagaaaagaatcatgccttcacttaat 598
Query: 399 tctttcagaagatt--aaaaaatgtatttattttaaattatgttacatgtatgtgtacat 456
|||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 599 tctttcagaagatttaaaaaaatgtatttattttaaattatgttacacgtatgtgtacat 658
Query: 457 aattatgtatatgtacacatctgtgggtatgcatacacgaggacaggtttctgtggaggt 516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 aattatgtatatgtacacatctgtgggtatgcatacacgaggacaggtttctgtggaggt 718
Query: 517 cacagacattggctgctcatagagctggagttacttgtgagcctctcaacctggcatgaa 576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 cacagacattggctgctcatagagctggagttacttgtgagcctctcaacctggcatgaa 778
Query: 577 atcaagtcctctggaagagcagttcatgctcttaaccactgagccatctctctagaccct 636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 atcaagtcctctggaagagcagttcatgctcttaaccactgagccatctctctagaccct 838
Query: 637 attaaaagtcgtgctttttttgtt 660
||||||||||||||||||||||||
Sbjct: 839 attaaaagtcgtgctttttttgtt 862
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 54
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1062
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1052
Effective search space: 683800
Effective search space used: 683800
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no178_d10.g1 MSMg01no178_d10.g1 CHROMAT_FILE:
MSMg01no178_d10.g1 PHD_FILE: MSMg01no178_d10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:50:57 2005
(583 letters)
>mm_chr4_35006410_35007390
Length = 981
Score = 476 bits (246), Expect = e-138
Identities = 271/280 (96%), Gaps = 2/280 (0%)
Strand = Plus / Minus
Query: 2 gggcatggttcaaattgtccaactctctcatggcttttctactctcacaggaacacctgg 61
|||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct: 478 gggcatggttcaaattgtccaa--ctctcatggtttttctactctcacaggaacacctgg 421
Query: 62 gatatgaatattcttgacacatacttgcatgcctttgtataatacttaaacataaatata 121
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 420 gatatgaatattcttgacacgtacttgcatgcctttgtataatacttaaacataaatata 361
Query: 122 tacaaagatttgggagggttgtggcattaaaagttaagaaaaaagggtgtttcaagaagt 181
||||| ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct: 360 tacaaggatttgggagggttgcggcattaaaagttaagaaaaaagggtgattcaagaagt 301
Query: 182 agaataattggcatctcacattgccgataaggcccttgaacaagacacctcgaatgggta 241
|||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 300 agaataattggcgtctcacactgccgataaggcccttgaacaagacacctcgaatgggta 241
Query: 242 agagatgctttgtcagggtttttgtgctcttgcttttctt 281
||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 agagatgctttgtcagggtttttgtgctcttgcttttctt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 981
Length adjustment: 10
Effective length of query: 573
Effective length of database: 971
Effective search space: 556383
Effective search space used: 556383
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
