BAC Information

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BAC

Clone NameMSMg01-178H11
Chromosome4 (Build37)
Map Location 55,140,687 - 55,291,929
singlet/doubletdoublet
Overlap geneLOC670211
Upstream geneLOC666901, LOC100041303, LOC384018, EG666920, Zfp462
Downstream geneRad23b, LOC666953, LOC100041348, Klf4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-178H11.T7 (MSMg01no178_h11.b1)MSMg01-178H11.TJ (MSMg01no178_h11.g1)
ACCAG372543AG372544
length746723
length of high quality
(start - end)		246 (125 - 370)281 (75 - 355)
definitionCHROMAT_FILE: MSMg01no178_h11.b1 PHD_FILE: MSMg01no178_h11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:51:16 2005CHROMAT_FILE: MSMg01no178_h11.g1 PHD_FILE: MSMg01no178_h11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:51:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,291,686 - 55,291,929)(55,140,687 - 55,140,966)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCGTGTGTACTGATCAGCCAGCTTACCAGTAGGGCGTGGCAAGGGA
GGGATGCACAGTTAATCATCCAGAATATCACTGAGCTGTGAGTGTATTCT
GCAGAAGAAGGCGCTTCCTAAGCACCTAGGAGGTCACCTTAGACACAGGA
GGAAATGAACATGTGATGTCTGGGCCATGCATCCAGGGGTCGGTCGATCT
GGAGGGCTGTACTTGGTGCCACACAAAAGCACTTGTTGGAGAGAAGCAGA
GATTTACGAGGAGGGAGCTTGGGAACCAGGGACACAGGAAGTGACTCAGA
AGGAACGGTATGAATTGGCGAGCTTGTGGTACCAGAACAAGGGAAAGGAC
CTGGGTGCTCTCCCCCCCCCACCGAGAATATATCAGCCAGTGGGTGCCAG
GAGCTCTCATCCAACGCGGCTGGGTTGTGTGGCATATTAACTGTCCTGTT
ACTACACTCTGCTGGCTATCCAAGCTCTCACAGAAGTTGTTACTCTATAT
TCTTTATCTTCTTCCCCCCTTTATCTCTTTAGATTTTGCTTTTCCATTTG
TGTTGTTTCCTTTTTTTTTGTCGCCTCCCCTTGCAGCTTCATTGTTTTTT
CTCCTTTACTCCCTATTTTTACCCCGTTCTCCGATTATCGTTTGTTCTGA
GTGTTTTTATCCGCGTTTGTATCGTGTTTTTTATTGTTTTGTTGTC

TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTTCCCTAAGGAGTTTGGGTCAGGGA
TTTGGTAACAGCTTTGTGACAGTGAAGTGGGCGTTAGAAATGTGGATGCT
CTCTCTCTGGGGACCACGCTTTCAGAAACACTGTGCAGAAAATGGCTTTC
TTCTTCACCACCATCAGTCGGCTTCTGTCAGATGAATCTCTTTTATATAC
CCTGTACTGGGCAACGATGCAGGGCTCCTTGTTTGCCCTAAGCCAAAATC
AGAGAAGCCCCTCTTCGTCTAAGATGCATAGGAAGCACGTGGCTTGTTAC
ACTGTTTTTATGGAGCCAGCCCCCCACGGTGATCCCAAGCTTCTATATTT
CGTACAAGTTCCTATGCACCGACAGAGCTCTGCAGCAGGAGTTGGCAAAC
TTCCTCCGTGTAGGACCAGATAGTAAACCTTTAGGCATCACAGGTCATGA
AATCTCTGCTGTGACTACGCAACTCTGATCTTATAGCCCAACCGCAGCCC
TACTCAATGCAGTCATGGCTGTGCGCCAATAAAACTTTGTTTACAAAAGC
AGGTTGAAAAGGTGGTAATTTCCCAAATGGGTAATAGGTGGCTAATTCTG
ATTATAAAGATTTGAGGAAACTAATCCGCGGGCCTTTGCTGTGCTAAAGC
GAGGTGTATTAGTTTTTTTCAGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no178_h11.b1 MSMg01no178_h11.b1 CHROMAT_FILE:
MSMg01no178_h11.b1 PHD_FILE: MSMg01no178_h11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:51:16 2005
         (246 letters)



>mm_chr4_55291486_55292131
          Length = 646

 Score =  464 bits (240), Expect = e-135
 Identities = 243/244 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atatcactgagctgtgagtgtattctgcagaagaaggcgcttcctaagcacctaggaggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 atatcactgagctgtgagtgtattctgcagaagaaggcgcttcctaagcacctaggaggt 385

                                                                       
Query: 61  caccttagacacaggaggaaatgaacatgtgatgtctgggccatgcatccaggggtcggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 caccttagacacaggaggaaatgaacatgtgatgtctgggccatgcatccaggggtcggt 325

                                                                       
Query: 121 cgatctggagggctgtacttggtgccacacaaaagcacttgttggagagaagcagagatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cgatctggagggctgtacttggtgccacacaaaagcacttgttggagagaagcagagatt 265

                                                                       
Query: 181 tacgaggagggagcttgggaaccagggacacaggaagtgactcagaaggaacggtatgaa 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 264 tacgaggagggagcttgggaaccagggacacaggaagtgactcagaaggaacgggatgaa 205

               
Query: 241 ttgg 244
           ||||
Sbjct: 204 ttgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no178_h11.g1 MSMg01no178_h11.g1 CHROMAT_FILE:
MSMg01no178_h11.g1 PHD_FILE: MSMg01no178_h11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:51:16 2005
         (281 letters)



>mm_chr4_55140487_55141167
          Length = 681

 Score =  534 bits (276), Expect = e-156
 Identities = 279/280 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttccctaaggagtttgggtcagggatttggtaacagctttgtgacagtgaagtgggcgt 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 cttccctaaggagtttgggtcagggatttggtaacagctttgtgaaagtgaagtgggcgt 260

                                                                       
Query: 61  tagaaatgtggatgctctctctctggggaccacgctttcagaaacactgtgcagaaaatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagaaatgtggatgctctctctctggggaccacgctttcagaaacactgtgcagaaaatg 320

                                                                       
Query: 121 gctttcttcttcaccaccatcagtcggcttctgtcagatgaatctcttttatataccctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctttcttcttcaccaccatcagtcggcttctgtcagatgaatctcttttatataccctg 380

                                                                       
Query: 181 tactgggcaacgatgcagggctccttgtttgccctaagccaaaatcagagaagcccctct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tactgggcaacgatgcagggctccttgtttgccctaagccaaaatcagagaagcccctct 440

                                                   
Query: 241 tcgtctaagatgcataggaagcacgtggcttgttacactg 280
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcgtctaagatgcataggaagcacgtggcttgttacactg 480


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space:   182784
Effective search space used:   182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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