BAC Information

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BAC

Clone NameMSMg01-178I02
Chromosome4 (Build37)
Map Location 28,320,553 - 28,320,862
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040691, Tpm3-rs2, LOC100040842, LOC100040735, LOC230044
Downstream geneLOC665141, LOC100040773, Epha7, LOC100040907, LOC100040811
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-178I02.T7 (MSMg01no178_i02.b1)MSMg01-178I02.TJ (MSMg01no178_i02.g1)
ACCAG372570AG372571
length698701
length of high quality
(start - end)
315 (46 - 360)288 (77 - 364)
definitionCHROMAT_FILE: MSMg01no178_i02.b1 PHD_FILE: MSMg01no178_i02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:51:19 2005CHROMAT_FILE: MSMg01no178_i02.g1 PHD_FILE: MSMg01no178_i02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:51:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATAAGCATATTAGAACATCCAAAATCTAAAGTAAAGAAAGTATTT
GTCATTGAAGATATAAATTATACGAGCAATTTTTTTCTTGGGTGGAATAT
GTGTTATATTAATTTACTGAGTAAATTAACTATAGGTGATTCCAATTCAA
ATCCTCAAGATTTAGAATTGTGCCTTAAGTTTTCTCTTCAAGTTATTGCT
TGGTTACTCCTTTGCTTACTTTTTCTTAAAATACCTTATTGAAAATGAAA
TTTTTGACTGTGGGCAACAACAGCCTTCCAATTGATGCCCTGTCTTTCTA
CTGGAGGTGTTATTTTCAAGTCCCCTCTCTCCCACTGTAGGGCATTGCAT
CTAAGGTCCCTTTGAGCTCCGAGTGTATCTCACCTCCCAGGTATCTGGTA
CATTTTAGAAGGTCTACCCACCTCCTACCTCCAGAAGTTGCCTGTTTCCA
TTCTTTTAGCTGACCCTCAGGGCTTCAGTCCTGCTCTCCTCTTATCCTTC
TTGTCTCCTTTGCCAACCATGCCCTTTTCTCCTTTCCCCATATTGTGATT
GCTTTCTTCTCCCTCACAGTGAAATTGAGCCATTCCCACTTGGAACCCTC
TGCTTGCGAGTTCCCTCGCAATATATGGATTTGTACCACGTCACTCCN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTAAGCCTTGTTTATAAATTCATT
ATCTTAACAATATCAGTGATCCTTCTGGCCTGTGCCTTCTCTCTGGGCAG
ATCATCAGTTTGTCTGCTCCTCTGAAGACTATATAGTCTGAAGACATCCC
AGGAGATCTACTACATTCAGATCAACAGGAAAGGGACCTTCCCAAACAAA
GCATTTGGGAACCCTGAGAAGCCTAGCAGATGGAGGACCTATCACCTCCG
CTCAAAGGATCATCAGCTTATCTGCCCCTCTAAAGACCCCACAGTGAAAA
GGTCTTCCAGGATATCTGCTGCACCCCCCACATGTAAGAGACCCTCCTAA
ATAACTGTAGAAGCTGAGACGCCCTCCCCCAGGAGCCCAGAAGACTAGGG
ACACATCCTTTCTGCTTAAACTCTACCTTCCTTCCAGCCTGCACCTTTCT
CCAGGGGAGATCATCACCTTGCATGCCTCTCTGAAGACTCCACAGTCTGA
AGGCATTCCAGGAGATCTGCTGCACCCAGGACAACTAAACCCACTGCCTG
ATGGTCTCCAAGGAGATTTGCTGGACCAAGGGTATCGGACCCAAGAGTCT
GAAGATCTCCCTGGAGATCTACTGCATCCAGTGAAACAAATCCTCTTGCA
N
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no178_i02.b1 MSMg01no178_i02.b1 CHROMAT_FILE:
MSMg01no178_i02.b1 PHD_FILE: MSMg01no178_i02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:51:19 2005
         (315 letters)



>mm_chr4_28320349_28321063
          Length = 715

 Score =  553 bits (286), Expect = e-162
 Identities = 304/310 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcataagcatattagaacatccaaaatctaaagtaaagaaagtatttgtcattgaa 64
           ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 205 gaattcataagcagattagaacatccaaaatctaaagtaaagaaaatatttgtcattgaa 264

                                                                       
Query: 65  gatataaattatacgagcaatttttttcttgggtggaatatgtgttatattaatttactg 124
           ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 265 gatataaattatatgagcaattttttccttgggtggaatatgtgttatattaatttactg 324

                                                                       
Query: 125 agtaaattaactataggtgattccaattcaaatcctcaagatttagaattgtgccttaag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agtaaattaactataggtgattccaattcaaatcctcaagatttagaattgtgccttaag 384

                                                                       
Query: 185 ttttctcttcaagttattgcttggttactcctttgcttactttttcttaaaataccttat 244
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 385 ttttctcttcaagttattgcttggttactcctttgcttattttttcttaaaataccttat 444

                                                                       
Query: 245 tgaaaatgaaatttttgactgtgggcaacaacagccttccaattgatgccctgtctttct 304
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 445 tgaaaatgaaatttttgactgtgggcaacaacagccttccaattgatgccctgtcttttt 504

                     
Query: 305 actggaggtg 314
           ||||||||||
Sbjct: 505 actggaggtg 514


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)