Query= MSMg01no179_a06.b1 MSMg01no179_a06.b1 CHROMAT_FILE:
MSMg01no179_a06.b1 PHD_FILE: MSMg01no179_a06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:51:55 2005
(677 letters)
>mm_chr4_120737683_120738760
Length = 1078
Score = 1214 bits (628), Expect = 0.0
Identities = 664/676 (98%), Gaps = 1/676 (0%)
Strand = Plus / Minus
Query: 3 gaattctttcctgtgttctttcttgtttgctgtattaattggtcgaagggaactttttgc 62
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 878 gaattctttcctgtgttttttcttgtttgctgtattaattggtcgaagggaactttttgc 819
Query: 63 cgcctttggtttttatgacagccaacccactctgatcggactcttgatcatctttcagtt 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 818 cgcctttggtttttatgacagccaacccactctgatcggactcttgatcatctttcagtt 759
Query: 123 tattttctcaccttacaatgaggtaatgtatgctttttaaaactaccatataatatagtt 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 tattttctcaccttacaatgaggtaatgtatgctttttaaaactaccatataatatagtt 699
Query: 183 tttgcctgtttcaaatctagactctttggggtagtgtaaaaaaa-aaataaagttctata 241
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 698 tttgcctgtttcaaatctagactctttggggtagtgtaaaaaaataaataaagttctata 639
Query: 242 atcttctagttcctcactgacagattggacagtataaaagtagccgggaaacctgagagg 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 atcttctagttcctcactgacagattggacagtataaaagtagccgggaaacctgagagg 579
Query: 302 aagtaactgaagtaactgagtgctcataacactgtcaggagataaatgagagaggtggcg 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 aagtaactgaagtaactgagtgctcataacactgtcaggagataaatgagagaggtggcg 519
Query: 362 cctagcaaccaaaaccttgttgtgtacctcagagctgcaggagctcgagcccagccatgt 421
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 518 cctagcaaccaaaaccttgttgtgtacctcagagctgcaggagctggagtccagccatgt 459
Query: 422 ggtcaccagtgtgggtgtgagaaatctgtgtgtgagaggacaagacaaattataactgaa 481
| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 gatcaccagtgtaggtgtgagaaatctgtgtgtgagaggacaagacaaattataactgaa 399
Query: 482 taggtgacagctagcctggaaagagctgtgtgatagtgttcctctgactgttcacagcaa 541
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 398 taggtgacagctagcctggaaagagctgtgtgacagtgttcctctgactgttcacagcaa 339
Query: 542 ctctaaagttccttccaggacccactaagccaaaagtgggtatttcaccagtgaggttag 601
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct: 338 ctctaaagttccttccaggacccactaagccaaaagtgggtatttcactagtgagcttag 279
Query: 602 gagctaatcaggagcagatcgtgcacgtgtgataagacacgttgatgagactgtatttca 661
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 278 aagctaatcaggagcagatcgtgcacgtgtgataagacatgttgatgagactgtatttca 219
Query: 662 gagcagactctcttgg 677
||||||| ||||||||
Sbjct: 218 gagcagaatctcttgg 203
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 677
Length of database: 1078
Length adjustment: 10
Effective length of query: 667
Effective length of database: 1068
Effective search space: 712356
Effective search space used: 712356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no179_a06.g1 MSMg01no179_a06.g1 CHROMAT_FILE:
MSMg01no179_a06.g1 PHD_FILE: MSMg01no179_a06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:51:55 2005
(651 letters)
>mm_chr4_120568502_120569551
Length = 1050
Score = 1228 bits (635), Expect = 0.0
Identities = 647/651 (99%), Gaps = 1/651 (0%)
Strand = Plus / Plus
Query: 1 tctctgatgggatgagagagagaacgtccttccaagtatttggctttttaaaaccacttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctctgatgggatgagagagagaacgtccttccaagtatttggctttttaaaaccacttc 260
Query: 61 ttcccaaatttcttttccaaaactttctcttggaaggcaatttggctgcttcctcaggga 120
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcccaaatttcttctccaaaactttctcttggaaggcaatttggctgcttcctcaggga 320
Query: 121 aagcagacctgagacttcttagcaactcctgtagcaatgagaactcacagaaggcaggaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagcagacctgagacttcttagcaactcctgtagcaatgagaactcacagaaggcaggaa 380
Query: 181 ccccttttttagaatttccaattgcatcctgcaaagagagagcgcgcgagagaaagtgag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccccttttttagaatttccaattgcatcctgcaaagagagagcgcgcgagagaaagtgag 440
Query: 241 agctgttagggactgacaagcacactgtttagataaaagcaattagccttttctatttga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agctgttagggactgacaagcacactgtttagataaaagcaattagccttttctatttga 500
Query: 301 gctctctgcagcatcttcccaaaccgtggctcctgggtggcaggtggacagctgggaggg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gctctctgcagcatcttcccaaaccgtggctcctgggtggcaggtggacagctgggaggg 560
Query: 361 aataccggctgcctcatgtgatgtccttgccaatccccctgaggagaaaattcttcacat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aataccggctgcctcatgtgatgtccttgccaatccccctgaggagaaaattcttcacat 620
Query: 421 ggcttctgcatgtacagtatttgggcaaaaaacaaaaaataaagtccatttgaaattggt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggcttctgcatgtacagtatttgggcaaaaaacaaaaaataaagtccatttgaaattggt 680
Query: 481 tttatgtatggctttctgaggatgttcttcattccaagagagaagagctctgagtattta 540
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 681 tttatgtatggctttctgaggatgttcttcattccaagagagaagagttctgagtattta 740
Query: 541 aaaagggaagagggatgttggctgggttgcttgagaggtaggaaagaggtacagctcaga 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aaaagggaagagggatgttggctgggttgcttgagaggtaggaaagaggtacagctcaga 800
Query: 601 ataaggtatgaagatgatgccggcctcctgccccttcctggggtgcttagt 651
| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 801 aaaaggtatgaagatgatgccggcctcct-ccccttcctggggtgcttagt 850
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1050
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1040
Effective search space: 666640
Effective search space used: 666640
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
