Query= MSMg01no179_g08.b1 MSMg01no179_g08.b1 CHROMAT_FILE:
MSMg01no179_g08.b1 PHD_FILE: MSMg01no179_g08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:52:24 2005
(470 letters)
>mm_chr4_89308747_89309617
Length = 871
Score = 779 bits (403), Expect = 0.0
Identities = 445/459 (96%), Gaps = 1/459 (0%)
Strand = Plus / Minus
Query: 5 gaattccagccaggat-ccatttagctaaagatgaatctgtgttacctatggggaataat 63
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 gaattccagccaggatatcatttagctaaagatgaatctgtgttacctatggggaataat 604
Query: 64 gtcaccttctagtgttttcttcatgattacatccagtgaagcacatgacattcaatattt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 gtcaccttctagtgttttcttcatgattacatccagtgaagcacatgacattcaatattt 544
Query: 124 ataggtaattaatactactaaagacaaagtcataagtccaaggcctgtgacagaactggg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 ataggtaattaatactactaaagacaaagtcataagtccaaggcctgtgacagaactggg 484
Query: 184 tatgttcttttaatttagtattattttctttaacccatgcagacttcagtaaaccattct 243
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 483 tatgttcttttaatttagtattattttctttaacccatgaagacttcagtaaaccattct 424
Query: 244 tgaatatctagtttgttcctgatacataataagtaatgagcaagttaccatacagatata 303
|||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct: 423 tgaatagctagtttgttccttatacataataagtaatgagcaagttaccatacagataca 364
Query: 304 taatattaatgtttcttattctttccccatctctctccttgctttgaattttttataagt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 taatattaatgtttcttattctttccccatctctctccttgctttgaattttttataagt 304
Query: 364 aatttacccgccatatcagattatagatggtaagttggaatcatcctatgtaagtactta 423
|||||| || | ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 303 aatttatttgctacatcagattataaatggtaagttggaatcatcctatgtaagtacttt 244
Query: 424 ctttacttttagtaataaaagaatgttatctagtattta 462
||||||||||||||||||||||||||||||||| |||||
Sbjct: 243 ctttacttttagtaataaaagaatgttatctagcattta 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 871
Length adjustment: 10
Effective length of query: 460
Effective length of database: 861
Effective search space: 396060
Effective search space used: 396060
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no179_g08.g1 MSMg01no179_g08.g1 CHROMAT_FILE:
MSMg01no179_g08.g1 PHD_FILE: MSMg01no179_g08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:52:24 2005
(445 letters)
>mm_chr4_89191588_89192432
Length = 845
Score = 652 bits (337), Expect = 0.0
Identities = 385/409 (94%), Gaps = 15/409 (3%)
Strand = Plus / Plus
Query: 1 tctcggcttaattccttgtaaggaacacactgtgccacacaaggaaa---------gctg 51
||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 192 tctcggcttaattccttgtaaggaacacactgtgccacacaaggaaagctctaagggctg 251
Query: 52 cagagtggccacaactgggtcaactaaactgataagctgagagtcattttgagagagact 111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 cagagtggccacaactgggtcaactaaactgataagctgagagtcattttgagagagact 311
Query: 112 cagacataagaagaactctatggtaatagaaagagtctttttt---tcctgctttataat 168
||||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 312 cagacat---aagaactctatggtaatagaaagagtcttttttcccccctgctttataat 368
Query: 169 gatttactaggctgtacattgctcttattgttttctgggactacaaggtgttagtaataa 228
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 gattgactacgctgtacattgctcttattgttttctgggactacaaggtgttagtaataa 428
Query: 229 atgtctctaagataaatgtataaacaatagttgtccattgctgaaaattcagctaatgga 288
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 atgtctctaaaataaatgtataaacaatagttgtccattgctgaaaattcagctaatgga 488
Query: 289 gaacacaagttatcatttttgagaggttttcatattttccatcttccagtaaaaaccgat 348
||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct: 489 gaatacaagttatcatttttgagaggttttcatattttccaccttccagtaaaaatcgat 548
Query: 349 tttcaaaaataggctaagcccaagatttagccataggctgtagttttct 397
||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct: 549 tttcaaaaataggctgagcccaagatttaaccataggctgtagttttct 597
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 445
Length of database: 845
Length adjustment: 10
Effective length of query: 435
Effective length of database: 835
Effective search space: 363225
Effective search space used: 363225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
