BAC Information

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BAC

Clone NameMSMg01-179M16
Chromosome4 (Build37)
Map Location 98,165,397 - 98,165,697
singlet/doubletsinglet
Overlap geneInadl
Upstream geneLOC620883, EG638698, Nfia, LOC100039459, LOC669426, LOC384106, 0610025J13Rik, Tm2d1
Downstream geneL1td1, Ankrd38, LOC100039541, Usp1, Dock7, Angptl3, LOC665193, Atg4c, LOC665212
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-179M16.T7 (MSMg01no179_m16.b1)MSMg01-179M16.TJ (MSMg01no179_m16.g1)
ACCAG373463
length743772
length of high quality
(start - end)
---301 (76 - 376)
definitionCHROMAT_FILE: MSMg01no179_m16.b1 PHD_FILE: MSMg01no179_m16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:52:53 2005CHROMAT_FILE: MSMg01no179_m16.g1 PHD_FILE: MSMg01no179_m16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:52:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATAATTTGCGGCCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTATTGATGAGAAAAAGCAACCACAA
CAAAAGTGTACACGCATTGAGCAATCTTTGATTCTAGTATGCTTATTTAA
GTGAATATCCAGTATGAGGATGTAGGGAAGGGCTGGCAGATAGAGAAAGC
TACTGTCAGTGGGGGACACCAGGCAACTATGTCACTGCTTCCAGCATCCA
AGACCACTTACACATTAAACACATCTGTTCCCTAGTAGGCTGCCCAGAAC
CCTCTTCCTTGAGGCTATATTGATATCTAGGATAGCACCTTGCCCAGCAG
AACAAATCCACAGGATTTACTAGAGGGAACGAGAAGAAATGTTCAAGGGA
GAAAGCTGGCTTCCGCCCACCTTGCTCATCACACTGAAAGAGATCAGTCT
GTTTATACAGCCGGCTCCTGTGTGAGCACAGCCCCTCATCCCTTTACAAT
ATCCCTCTAGGGCAGCCAAGTGCGGTTCGGCTCAGAGGGTAATAGTACTT
GCTGATCTTGTACTTGCCTCCGGTTTGATTCTCAGTACTTACCTATGCTT
CTCACAAGTTGTATTCCCGCCCCTCCCTGTTTCCGTGTTTCTGCCTTTTC
TTTTTCTTTTTTTCTTGCCCGCTCCTTTTTATTGTTCCCTGGCCCCTCTC
TCTTTTCCCCTGTTTCCCCAATCTACCTCACTTCTTTGCTTCGCATTATC
CCCCTTTTTTCCTTTCACTTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no179_m16.g1 MSMg01no179_m16.g1 CHROMAT_FILE:
MSMg01no179_m16.g1 PHD_FILE: MSMg01no179_m16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:52:53 2005
         (301 letters)



>mm_chr4_98165197_98165897
          Length = 701

 Score =  567 bits (293), Expect = e-166
 Identities = 299/301 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tattgatgagaaaaagcaaccacaacaaaagtgtacacgcattgagcaatctttgattct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tattgatgagaaaaagcaaccacaacaaaagtgtacacgcattgagcaatctttgattct 442

                                                                       
Query: 61  agtatgcttatttaagtgaatatccagtatgaggatgtagggaagggctggcagatagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 441 agtatgcttatttaagtgaatatccagtatgaggatgtagggaagggctggcagagagag 382

                                                                       
Query: 121 aaagctactgtcagtgggggacaccaggcaactatgtcactgcttccagcatccaagacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaagctactgtcagtgggggacaccaggcaactatgtcactgcttccagcatccaagacc 322

                                                                       
Query: 181 acttacacattaaacacatctgttccctagtaggctgcccagaaccctcttccttgaggc 240
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 321 acttacacattaaacacatctgttccctagcaggctgcccagaaccctcttccttgaggc 262

                                                                       
Query: 241 tatattgatatctaggatagcaccttgcccagcagaacaaatccacaggatttactagag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatattgatatctaggatagcaccttgcccagcagaacaaatccacaggatttactagag 202

            
Query: 301 g 301
           |
Sbjct: 201 g 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 301
Length of database: 701
Length adjustment: 9
Effective length of query: 292
Effective length of database: 692
Effective search space:   202064
Effective search space used:   202064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)