Query= MSMg01no179_m17.b1 MSMg01no179_m17.b1 CHROMAT_FILE:
MSMg01no179_m17.b1 PHD_FILE: MSMg01no179_m17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:52:53 2005
(483 letters)
>mm_chr4_98067579_98068462
Length = 884
Score = 874 bits (452), Expect = 0.0
Identities = 473/480 (98%), Gaps = 1/480 (0%)
Strand = Plus / Plus
Query: 5 gaattcctactgttagactgagtcatggagtccagccacacagtcttgtgacaaaaaggg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctactgttagactgagtcatggagtccagccacacagtcttgtgacaaaaaggg 264
Query: 65 ga-ggggggcctccagagaaagagtaagaaccctaaaatacagaaaaggcatttttaggc 123
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gagggggggcctccagagaaagagtaagaaccctaaaatacagaaaaggcatttttaggc 324
Query: 124 tttggccagcatccaaagaaaaaagaagggagggacaggaaaaaactgtgcctctgagtg 183
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tttggccagcatacaaagaaaaaagaagggagggacaggaaaaaactgtgcctctgagtg 384
Query: 184 gtgcttaggagggcagacctaacagagcttcatggcattcgggatagttattcctcctat 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtgcttaggagggcagacctaacagagcttcatggcattcgggatagttattcctcctat 444
Query: 244 ctcttcaggatggattaaggaggatcaagccttcctgagtctgctccctaaacgagatga 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctcttcaggatggattaaggaggatcaagccttcctgagtctgctccctaaacgagatga 504
Query: 304 ttgatctcccaactggaatgttaagtctccacccaggccagagatgccattcccctgagc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttgatctcccaactggaatgttaagtctccacccaggccagagatgccattcccctgagc 564
Query: 364 agagcaaacaccccccccttaatgggcccttaatgccactgtaacacttgtttgttttgc 423
|||||||| | | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agagcaaatagctttcccttaatgggcccttaatgccactgtaacacttgtttgttttgc 624
Query: 424 gtgacagcctatacagagttctggtggcagcctccaccactctttggtttggattctgtt 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gtgacagcctatacagagttctggtggcagcctccaccactctttggtttggattctgtt 684
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 884
Length adjustment: 10
Effective length of query: 473
Effective length of database: 874
Effective search space: 413402
Effective search space used: 413402
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no179_m17.g1 MSMg01no179_m17.g1 CHROMAT_FILE:
MSMg01no179_m17.g1 PHD_FILE: MSMg01no179_m17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:52:53 2005
(446 letters)
>mm_chr4_98165052_98165897
Length = 846
Score = 832 bits (430), Expect = 0.0
Identities = 442/446 (99%)
Strand = Plus / Minus
Query: 1 tattgatgagaaaaagcaaccacaacaaaagtgtacacgcattgagcaatctttgattct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 tattgatgagaaaaagcaaccacaacaaaagtgtacacgcattgagcaatctttgattct 587
Query: 61 agtatgcttatttaagtgaatatccagtatgaggatgtagggaagggctggcagagagag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 agtatgcttatttaagtgaatatccagtatgaggatgtagggaagggctggcagagagag 527
Query: 121 aaagctactgtcagtgggggacaccaggcaactatgtcactgcttccagcatccaagacc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 aaagctactgtcagtgggggacaccaggcaactatgtcactgcttccagcatccaagacc 467
Query: 181 acttacacattaaacacatctgttccctagtaggctgcccagaaccctcttccttgaggc 240
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 466 acttacacattaaacacatctgttccctagcaggctgcccagaaccctcttccttgaggc 407
Query: 241 tatattgatatctaggatagcaccttgcccagcagaacaaatccacaggatttactagag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 tatattgatatctaggatagcaccttgcccagcagaacaaatccacaggatttactagag 347
Query: 301 ggaacgagaagaaatgttcaagggagaaagctggcttccgtccaccctgctcatcacaca 360
||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 346 ggaacgagaagaaatgtccaagggagaaagctggcttccgtctaccttgctcatcacaca 287
Query: 361 gaaagagatcagcctgtgcagacagcagggtcctgtgtgagcacagcacctcatcccttt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 gaaagagatcagcctgtgcagacagcagggtcctgtgtgagcacagcacctcatcccttt 227
Query: 421 aaaagatccctctagggcagccaagg 446
||||||||||||||||||||||||||
Sbjct: 226 aaaagatccctctagggcagccaagg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 446
Length of database: 846
Length adjustment: 10
Effective length of query: 436
Effective length of database: 836
Effective search space: 364496
Effective search space used: 364496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
