BAC Information

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BAC

Clone NameMSMg01-180E10
Chromosome4 (Build37)
Map Location 152,951,148 - 153,085,042
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC667039, Gm833, LOC100042089, Ajap1
Downstream geneBC039966, A430005L14Rik, Dffb, BC046331, Lrrc47, 1190007F08Rik, Ccdc27, Trp73, Wdr8, 1200015A19Rik, Megf6, Arhgef16, Prdm16, LOC100043342, LOC100042178, Actrt2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-180E10.T7 (MSMg01no180_e10.b1)MSMg01-180E10.TJ (MSMg01no180_e10.g1)
ACCAG373802AG373803
length791751
length of high quality
(start - end)		260 (42 - 301)288 (72 - 359)
definitionCHROMAT_FILE: MSMg01no180_e10.b1 PHD_FILE: MSMg01no180_e10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:53:28 2005CHROMAT_FILE: MSMg01no180_e10.g1 PHD_FILE: MSMg01no180_e10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:53:28 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(152,951,148 - 152,951,400)(153,084,757 - 153,085,042)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAATAGCTGTTCATTAGGGAGTCAGGTTGCCCCTTCCCAGCGCCTTTGCT
CCTTTACAGGAGTATTTACCCTAGAAACATACATAGAACTTACCATTATC
ATGGAAAGTGATGTTAACACTCAGCCCCTGCTGGGTGCCCAGTGAGACCC
CTGGTCTGCTTTACTGTCAATCATCCTGGCATTGTGTAATACCTAACCCA
GTGTAAATATATGGTAGATTATAGTGTTTGGGGAATAATGAGAAGGGGCT
TCNTNTTTTTTCCTTTTTTTTTTCTTTCGTTTCTTGTTCTCTTTCCTCTT
TCCTTTTTTTTTTTTTCCCCCCCCCCCCTTCTCTTTTTTTACCTTTATTT
GCCTCGCTTTATCCTCCCCCCCCTCTAAAAAAAAATAATACACTATTCGC
TTTAGATTACCCTTCCCTCTTTCCCTTTATTTTTTCTTCTTTCCTCCACT
ATAACCGCTACCTCCCTTATCTCTCTTCATATCACTTATTTCCACCCCTC
CCCAACCATTCTCTCCTTTTTCTCTCTTACCTTCAATAATCCCCATTTCT
CCCATTTCTCCTTCCTTCCTTATTATTCCCACTATTCCATTTGTTTATTC
TCCCAACTTCATATCACCCACTAGTCAATAACCCCCCAATTTATTTTTCC
TTTTAACAATCTGATCTATTACCATATCCTTCTCCTCTTTCTTTTTGCCA
CTCCCCTCCTCTTTCCCTAATACTATCCTCCTTCTTTTCTC

GACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAGGATGGCAAGAATGTAGAACACACACCA
AGAAAAGCCGCAGGCCATGACCAGAGCAGACCCAGGGCAGAGGCCATGGA
GAGAGGTTGCATGGGCTTCGAGCAGCAAGGACAGGGTGGGAAGCCCCAGG
GTCCACACCACTCACAGTGTGCATCTGCTGCTGCACAGAAAGCTACGGGG
TGGGTGCAGGGTTTGCTCTCTGTGTCTGGCCTCACTTTGGGCATAGACCT
CACAGGGCACCTGTCTGTCCTGTCCCTCGTTTGGGGATGGGCAATGTTTA
TTTCTTGTCTTTGTTTTTGCCCACCCCGCTCTGAGATGTGTGAGTGCACA
CACCATTGTGTGTCCGCCTTGAGTCTCAGAGAAAACTTGGGCTGAGGATT
GCGGTCTGACTTGCGGTTGTGACGATTTGGCGGTTGTTCTGACCCAAATT
CACTTAGTGTCTTGGCCCTGACAGGCAGTCGTGAAATCTGGAGGCAGAAA
CTTGAAACCTTGGTTTTCTAATTTCTTTAGAGACGCGCTTGGCCCATTGG
TCCATTTGATACCTTGTATTTGAGGGCTTGTCCTGTTTTCTTTTGGTTCA
CTCCTTAGTTTGCTCTTTTTCACCTTTTTTTCTCTTCCCCTTCCCCCCTA
TTTCACCTGTTTCCCTCCTTACCTAAACCCACTTGACTTTTCTTCCGCTC
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no180_e10.b1 MSMg01no180_e10.b1 CHROMAT_FILE:
MSMg01no180_e10.b1 PHD_FILE: MSMg01no180_e10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:53:28 2005
         (260 letters)



>mm_chr4_152950944_152951603
          Length = 660

 Score =  458 bits (237), Expect = e-133
 Identities = 249/253 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaatagctgttcattagggagtcaggttgccccttcccagcgcctttgctccttt 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaatagctgttaattagggagtcaggttgccccttcccagcgcctttgctccttt 264

                                                                       
Query: 65  acaggagtatttaccctagaaacatacatagaacttaccattatcatggaaagtgatgtt 124
           |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 265 acaggagtatttacactagaaacatacatagaacttatcattatcatggaaagtgatgtt 324

                                                                       
Query: 125 aacactcagcccctgctgggtgcccagtgagacccctggtctgctttactgtcaatcatc 184
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 325 aacactcagcccctgctgggtgcccagtgagccccctggtctgctttactgtcaatcatc 384

                                                                       
Query: 185 ctggcattgtgtaatacctaacccagtgtaaatatatggtagattatagtgtttggggaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctggcattgtgtaatacctaacccagtgtaaatatatggtagattatagtgtttggggaa 444

                        
Query: 245 taatgagaagggg 257
           |||||||||||||
Sbjct: 445 taatgagaagggg 457


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 260
Length of database: 660
Length adjustment: 9
Effective length of query: 251
Effective length of database: 651
Effective search space:   163401
Effective search space used:   163401
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no180_e10.g1 MSMg01no180_e10.g1 CHROMAT_FILE:
MSMg01no180_e10.g1 PHD_FILE: MSMg01no180_e10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:53:28 2005
         (288 letters)



>mm_chr4_153084557_153085244
          Length = 688

 Score =  530 bits (274), Expect = e-155
 Identities = 283/286 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggatggcaagaatgtagaacacacaccaagaaaagccgcaggccatgaccagagcagac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 486 aggatggcaagaatgtagaacacacaccaagaaaagccgcaggccatgagcagagcagac 427

                                                                       
Query: 61  ccagggcagaggccatggagagaggttgcatgggcttcgagcagcaaggacagggtggga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 ccagggcagaggccatggagagaggttgcatgggcttcgagcagcaaggacagggtggga 367

                                                                       
Query: 121 agccccagggtccacaccactcacagtgtgcatctgctgctgcacagaaagctacggggt 180
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 366 agccccagggtccacaccactcacagtgtgcatctgctgctgcacagagagctacggggt 307

                                                                       
Query: 181 gggtgcagggtttgctctctgtgtctggcctcactttgggcatagacctcacagggcacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 306 gggtgcagggtttgctctctgtgtctggcctcactttgggcatagacttcacagggcacc 247

                                                         
Query: 241 tgtctgtcctgtccctcgtttggggatgggcaatgtttatttcttg 286
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tgtctgtcctgtccctcgtttggggatgggcaatgtttatttcttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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