BAC Information

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BAC

Clone NameMSMg01-180F21
Chromosome4 (Build37)
Map Location 138,429,661 - 138,429,794
singlet/doubletsinglet
Overlap genenone
Upstream geneEce1, LOC100040558, Eif4g3, Hp1bp3, Kif17, Ddost, Pink1, Cda, LOC625638, LOC625646, 0610009K11Rik, Camk2n1, LOC100040618, 4931403E03Rik, Ubxd3, Pla2g2c, Pla2g2f, Pla2g2d, Pla2g5, Pla2g2a
Downstream genePla2g2e, Otud3, Rnf186, Tmco4, Htr6, LOC665683, Nbl1, 2310028O11Rik, Hspe1-ps4, 9530077C14Rik, Capzb, Pqlc2, LOC100042808, Akr7a5, LOC625977, LOC626000, Mrto4, C230096C10Rik, Zubr1, C79267, Aldh4a1, Tas1r2, Pax7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-180F21.T7 (MSMg01no180_f21.b1)MSMg01-180F21.TJ (MSMg01no180_f21.g1)
ACCAG373866AG373867
length740738
length of high quality
(start - end)
115 (115 - 229)135 (147 - 281)
definitionCHROMAT_FILE: MSMg01no180_f21.b1 PHD_FILE: MSMg01no180_f21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:53:35 2005CHROMAT_FILE: MSMg01no180_f21.g1 PHD_FILE: MSMg01no180_f21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:53:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTGGCATC
CACCATTGTGTCTGGGTTTGAAGTCTGTATATGGGACGGATTTCCAGGTT
GTGATTTCTCCGCATGGCCTTTCCTCCAGTCTCTGCTCTATACTTTGTCT
CTGTATTTCCTCCCAAGAATATTTTGTTTCCTTTTCTAAGAAGGACCAAA
CCACATTCATTGTGGTCTTCCTTCTTCTTGAACTTCGTGTGGTCTGTGAA
TTGTATCTTGGATAGTCTGAGGTTTTGGCCTAATATCCACTTATCTGTAA
GTGCATACTATGTGTGTTCTTTGTGACTGGCTTACCTCACTCATGATTAT
ATTTTGTCGACCCATCTATTTGCCTAAGAATTTCATGAAGTCTTGTTTTT
AATAGCTGAGAAGAACTTCATTGTATACGTGTACCACATTTTCTGTATCC
TTTCAAGACTTGTTTATGTAATCATATTTTTGAGTCTTCGTAAATTCAGT
TACGTGTCATGCATAGAAGCACTACCTCATAGCGGATACCTTAATATGAT
GACCTTCATAATCACCCTCCCCCCATTATTGCAGTATTATCAACAGTTTC
TGGGCTTATTTGTAGACATTAGGCACACCACAGGCAGTTGTTCTCTAAAT
TTAAACCAGTTGTGAGAATCTCTCATGGTCGCTGACTATTAAGAAAAAAG
TTAAGCTATCATTCACCTTAGCTCTTGTAAGATCATAGTN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXACTCTGAGCTTTGCATATGATGACTACTTGGGGAG
GGGTAGTCATTGCCGTCGAGTTTGTTTTGTTGTTTTGTTGAGAGTCACAG
AGAAGGGGACGATTAATTATCCTTGGATGCTGTATTTATTAATTGTCTCA
CCGCGCGACCACATGCCTGATATGAAGCAACCTATAGGAGAAAGGATTTA
TTTTGCCTTGAGATGCTGGAACCCATCGTGCCAGGGAAGCGCGGTGGCCA
GCTCCATTCATATGCTGGGAGTTTGCCACAGAGTTTGTTGCATCTCATAT
TATTTTTTACCCCCACCCCCACCAGGCTGGAAGCACGGTTGGGCTATAAT
CCACAACCCCATCCATCCAAGATTCCCACTCCTTCCAGGTAGGTTCCATC
TTCTACAAGCCATAAAACCTCCTGAAAAGCAGATGGAGTAGAAAAGCTCT
GCCCTTGGTTCCATAATGAAGCTGTCCCAAAGTCATGCAACAGAGACTAC
CTGGGTCCTTCCTTCGCCAAGGCCTAAGGGATTATCTCCTCCATCCAGCC
TGCTTTCACCATTTCAGGAAAGAAGGAAGACCATACTGCATGTCTGCCAC
CATGTGAGAAATCAGGCCCTTGTTCCACTTCCCCTGATTGCTCCCTGGCT
ATCCAATATGTAAACCAAATCTTTGTAACACGTTTACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no180_f21.g1 MSMg01no180_f21.g1 CHROMAT_FILE:
MSMg01no180_f21.g1 PHD_FILE: MSMg01no180_f21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:53:35 2005
         (135 letters)



>mm_chr4_138429461_138429995
          Length = 535

 Score =  213 bits (110), Expect = 4e-60
 Identities = 128/134 (95%)
 Strand = Plus / Minus

                                                                       
Query: 1   acagagaaggggacgattaattatccttggatgctgtatttattaattgtctcaccgcgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | 
Sbjct: 334 acagagaaggggacgattaattatccttggatgctgtatttattaattgtctcaccgtgt 275

                                                                       
Query: 61  gaccacatgcctgatatgaagcaacctataggagaaaggatttattttgccttgagatgc 120
           |||||||||||||||||||||||||||| ||||||||||||||||||||  |||||||||
Sbjct: 274 gaccacatgcctgatatgaagcaacctaaaggagaaaggatttattttggtttgagatgc 215

                         
Query: 121 tggaacccatcgtg 134
           ||||| ||||||||
Sbjct: 214 tggaatccatcgtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 135
Length of database: 535
Length adjustment: 8
Effective length of query: 127
Effective length of database: 527
Effective search space:    66929
Effective search space used:    66929
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)