BAC Information

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BAC

Clone NameMSMg01-180G21
Chromosome4 (Build37)
Map Location 138,268,979 - 138,429,873
singlet/doubletdoublet
Overlap geneUbxd3, Pla2g2c, Pla2g2f, Pla2g2d, Pla2g5, Pla2g2a
Upstream geneRap1gap, Akp2, Ece1, LOC100040558, Eif4g3, Hp1bp3, Kif17, Ddost, Pink1, Cda, LOC625638, LOC625646, 0610009K11Rik, Camk2n1, LOC100040618, 4931403E03Rik
Downstream genePla2g2e, Otud3, Rnf186, Tmco4, Htr6, LOC665683, Nbl1, 2310028O11Rik, Hspe1-ps4, 9530077C14Rik, Capzb, Pqlc2, LOC100042808, Akr7a5, LOC625977, LOC626000, Mrto4, C230096C10Rik, Zubr1, C79267, Aldh4a1, Tas1r2, Pax7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-180G21.T7 (MSMg01no180_g21.b1)MSMg01-180G21.TJ (MSMg01no180_g21.g1)
ACCAG373909AG373910
length709707
length of high quality
(start - end)		607 (45 - 651)291 (73 - 363)
definitionCHROMAT_FILE: MSMg01no180_g21.b1 PHD_FILE: MSMg01no180_g21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:53:40 2005CHROMAT_FILE: MSMg01no180_g21.g1 PHD_FILE: MSMg01no180_g21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:53:40 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(138,268,979 - 138,269,581)(138,429,584 - 138,429,873)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAGTACTGGTGACGCTGACTTGGGAGTTGAGTCCAGGAGTTCAAGA
CCAGCCTAAGCAATGTAATGTGGCCCTGTCCTGTCAATTATCGATTAGTT
GAACAAGAACCAGTGTTCATATAGTTCAATACCACATATATTTTGCAAAG
TACAATGCACTACATAAATATGGATAGAGATAAAACAGAGATTGTCCCTG
CTTTGCATAATAATCATCAGATAGAATCTATCTTAGTTTTAATTTTTAAA
ACAAACATTATTGTTGTTTGTTTTTTAGACAGGGTGTCTCACTCTGTAGC
CCTGACTGTCCTGGAACTCACTATGTAGAACAGGCTGGCCTCAAACTCAT
AGATTCATTTCTTTCTGCCTCCCTAGTGCTGGATTAAAGGGTATGCACCA
TCACACTCGGCAAAATTCAAATTTTATTTCATGTGTATCTGAATTTTGCT
TGCATGTATGTATATGGCTATGTATGTGCACACCCTGTGTGTAATGCCCT
TGGAGACCAGAGGAGGCTGTGGATCGCTGGAACTGANTATGGACAATTAC
AAGTTGCCTTGTAGGTTCTAGGCATCGAACCCAGGTCCTCTAGATGAACA
GTAATTTTTTTATTATTAAATTTTATTTTTATGTGTATAGGTGCTTTGTC
TACATGTGT

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTGGTGATCTCGGGGACACAGGCCAGGG
AAATGTGTATGTATCCTTGACGCAGGTGTGGGGCTTATCAGTTTGATAGT
CACAGAGAAGGGGACGATTAATTATCCTTGGATGCTGTATTTATTAATTG
TCTCACCGTGTGACCACATGCCTGATATGAAGCAACCTAAAGGAGAAAGG
ATTTATTTTGGTTTGAGATGCTGGAATCCATCGTGGCAGGGAAGCGTGGT
GGGCAGCTCCATTCAGATGCTGGGAGTTTGCCACAGAGTTTGTTGCATCT
CAGATGATGGGATTTGTTTACAGCACCCACCCTGGAAGCAGGGCTGGGCT
ATAACCCACAAGCCCATCCTCCCATGTTTCCCACTCCTTCCAGGTAGGTT
CCATCTTCTACAAGCCATAAAACCTCCTGAAAAGCAGATGGAGCAGAAAA
GCTCTGCCCTTGGTTCCATAATGAAGCTGTCCCAAAGTCATGCAACAGAG
ACTACCTGGGTCCTTCCTTCGCAAGGCCTAAGGGATTATCTCCTCCATCC
AGCCTGCTTTCACCATTTCAGGAAAGATGGAAGACCAGACTGCAGGCCTG
CCAACATGTGAGAATCAGGCCATGGGCCCCTTCCCTGATTGGGCCTGGGT
AGCAGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no180_g21.b1 MSMg01no180_g21.b1 CHROMAT_FILE:
MSMg01no180_g21.b1 PHD_FILE: MSMg01no180_g21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:53:40 2005
         (607 letters)



>mm_chr4_138268775_138269781
          Length = 1007

 Score = 1137 bits (588), Expect = 0.0
 Identities = 599/603 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccagtactggtgacgctgacttgggagttgagtccaggagttcaagaccagccta 64
           ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccagtactggagatgctgacttgggagttgagtccaggagttcaagaccagccta 264

                                                                       
Query: 65  agcaatgtaatgtggccctgtcctgtcaattatcgattagttgaacaagaaccagtgttc 124
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agcaatgtaatgtggtcctgtcctgtcaattatcgattagttgaacaagaaccagtgttc 324

                                                                       
Query: 125 atatagttcaataccacatatattttgcaaagtacaatgcactacataaatatggataga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atatagttcaataccacatatattttgcaaagtacaatgcactacataaatatggataga 384

                                                                       
Query: 185 gataaaacagagattgtccctgctttgcataataatcatcagatagaatctatcttagtt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gataaaacagagattgtccctgctttgcataataatcatcagatagaatctatcttagtt 444

                                                                       
Query: 245 ttaatttttaaaacaaacattattgttgtttgttttttagacagggtgtctcactctgta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttaatttttaaaacaaacattattgttgtttgttttttagacagggtgtctcactctgta 504

                                                                       
Query: 305 gccctgactgtcctggaactcactatgtagaacaggctggcctcaaactcatagattcat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gccctgactgtcctggaactcactatgtagaacaggctggcctcaaactcatagattcat 564

                                                                       
Query: 365 ttctttctgcctccctagtgctggattaaagggtatgcaccatcacactcggcaaaattc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttctttctgcctccctagtgctggattaaagggtatgcaccatcacactcggcaaaattc 624

                                                                       
Query: 425 aaattttatttcatgtgtatctgaattttgcttgcatgtatgtatatggctatgtatgtg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aaattttatttcatgtgtatctgaattttgcttgcatgtatgtatatggctatgtatgtg 684

                                                                       
Query: 485 cacaccctgtgtgtaatgcccttggagaccagaggaggctgtggatcgctggaactgant 544
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 685 cacaccctgtgtgtaatgcccttggagaccagaggaggctgtggatcgctggaactgaat 744

                                                                       
Query: 545 atggacaattacaagttgccttgtaggttctaggcatcgaacccaggtcctctagatgaa 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 atggacaattacaagttgccttgtaggttctaggcatcgaacccaggtcctctagatgaa 804

              
Query: 605 cag 607
           |||
Sbjct: 805 cag 807


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1007
Length adjustment: 10
Effective length of query: 597
Effective length of database: 997
Effective search space:   595209
Effective search space used:   595209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no180_g21.g1 MSMg01no180_g21.g1 CHROMAT_FILE:
MSMg01no180_g21.g1 PHD_FILE: MSMg01no180_g21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:53:40 2005
         (291 letters)



>mm_chr4_138429538_138430228
          Length = 691

 Score =  553 bits (286), Expect = e-162
 Identities = 289/290 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctggtgatctcggggacacaggccagggaaatgtgtatgtatccttgacgcaggtgtggg 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 336 ctggtgatctcggggacacaggccagggaaatgtgtatgtatccttgacggaggtgtggg 277

                                                                       
Query: 61  gcttatcagtttgatagtcacagagaaggggacgattaattatccttggatgctgtattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 gcttatcagtttgatagtcacagagaaggggacgattaattatccttggatgctgtattt 217

                                                                       
Query: 121 attaattgtctcaccgtgtgaccacatgcctgatatgaagcaacctaaaggagaaaggat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 attaattgtctcaccgtgtgaccacatgcctgatatgaagcaacctaaaggagaaaggat 157

                                                                       
Query: 181 ttattttggtttgagatgctggaatccatcgtggcagggaagcgtggtgggcagctccat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 ttattttggtttgagatgctggaatccatcgtggcagggaagcgtggtgggcagctccat 97

                                                             
Query: 241 tcagatgctgggagtttgccacagagtttgttgcatctcagatgatggga 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96  tcagatgctgggagtttgccacagagtttgttgcatctcagatgatggga 47


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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