BAC Information

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BAC

Clone NameMSMg01-180G22
Chromosome4 (Build37)
Map Location 138,268,979 - 138,429,873
singlet/doubletdoublet
Overlap geneUbxd3, Pla2g2c, Pla2g2f, Pla2g2d, Pla2g5, Pla2g2a
Upstream geneRap1gap, Akp2, Ece1, LOC100040558, Eif4g3, Hp1bp3, Kif17, Ddost, Pink1, Cda, LOC625638, LOC625646, 0610009K11Rik, Camk2n1, LOC100040618, 4931403E03Rik
Downstream genePla2g2e, Otud3, Rnf186, Tmco4, Htr6, LOC665683, Nbl1, 2310028O11Rik, Hspe1-ps4, 9530077C14Rik, Capzb, Pqlc2, LOC100042808, Akr7a5, LOC625977, LOC626000, Mrto4, C230096C10Rik, Zubr1, C79267, Aldh4a1, Tas1r2, Pax7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-180G22.T7 (MSMg01no180_g22.b1)MSMg01-180G22.TJ (MSMg01no180_g22.g1)
ACCAG373911AG373912
length710714
length of high quality
(start - end)
319 (46 - 364)292 (76 - 367)
definitionCHROMAT_FILE: MSMg01no180_g22.b1 PHD_FILE: MSMg01no180_g22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:53:40 2005CHROMAT_FILE: MSMg01no180_g22.g1 PHD_FILE: MSMg01no180_g22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:53:40 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(138,268,979 - 138,269,293)(138,429,586 - 138,429,873)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAGTACTGGAGATGCTGACTTGGGAGTTGAGTCCAGGAGTTCAAG
ACCAGCCTAAGCAATGTAATGTGGCCCTGTCCTGTCAATTATCGATTAGT
TGAACAAGAACCAGTGTTCATATAGTTCAATACCACATATATTTTGCAAA
GTACAATGCACTACATAAATATGGATAGAGATAAAACAGAGATTGTCCCT
GCTTTGCATAATAATCATCAGATAGAATCTATCTTAGTTTTAATTTTTAA
AACAAACATTATTGTTGTTTGTTTTTTATACAGGGTGTCTCACTCTGTAG
CCCTGACTGTCCTGTTTTTTTTCTATCCCCACCCCGCTGGCCTCAAACTC
ATAGATTCATTTCTTTCTGCCTCCCTACAGATAAAATAAAGGGTATGCAC
CATCACACTCGGCAAAATTCAAATTTTATTTCATGTGTATCTGAATTTTG
CTTGCATGTATGTATATGGCTATGTATGTGCACACCCTGTGTGTAATGCC
CTTGGAGACCAGAGGAGGCTGTGGATCGCTGGAACTGAATATGGACAATT
ACAAGTTGCCTTGTAGGTTCTAGGCATCGAACCCAGGTCCTCTAGATGAA
CAGTAAATTTTTTATTATTAAATTTTATTTTTATGTGTATAGGCGCTTTG
TCTACATGTG
CGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTGGTGATCTCGGGGACACAGGCCA
GGGAAATGTGTATGTATCCTTTACGCACGTGTGGGGCTTATCAGTTTGAT
AGTCACAGAGAAGGGGACGATTAATTATCCTTGGATGCTGTATTTATTAA
TTGTCTCACCGTGTGACCACATGCCTGATATGAAGCAACCTAAAGGAGAA
AGGATTTATTTTGGTTTGAGATGCTGGAATCCATCGTGGCAGGGAAGCGT
GGTGGGCAGCTCCATTCAGATGCTGGTAGTTTGCCACAGAGTTTGTTGCA
TCTCAGATGATGGTATTTTTTTTACCACGCCCCACCCTGGAAGCAGGGCT
GGGCTATAACCCACAAGCCCATCCCTCCATGTTATCCCACTCCTTCCAGG
TAGGTTCCATCTTCTACAAGCCATAAAACCTCCTGAAAAGCAGATGGAGC
AGAAAAGCTCTGCCCTTGGTTCCATAATGAAGCTGTCCCAAAGTCATGCA
ACAGAGACTACCTGGGTCCTTCCTTCGCAAGGCCTAAGGGATTATCTCCT
CCATCCAGCCTGCTTTCACCATTTTAGGAAAGAAGGAAAACCAGACTGTA
GGCCTGCCAACATGTGAGAATCAGGCCATGGGCCACTTTCCTGATTGGGC
CCGGGTTATCAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no180_g22.b1 MSMg01no180_g22.b1 CHROMAT_FILE:
MSMg01no180_g22.b1 PHD_FILE: MSMg01no180_g22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:53:40 2005
         (319 letters)



>mm_chr4_138268775_138269493
          Length = 719

 Score =  594 bits (307), Expect = e-174
 Identities = 313/315 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccagtactggagatgctgacttgggagttgagtccaggagttcaagaccagccta 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccagtactggagatgctgacttgggagttgagtccaggagttcaagaccagccta 264

                                                                       
Query: 65  agcaatgtaatgtggccctgtcctgtcaattatcgattagttgaacaagaaccagtgttc 124
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agcaatgtaatgtggtcctgtcctgtcaattatcgattagttgaacaagaaccagtgttc 324

                                                                       
Query: 125 atatagttcaataccacatatattttgcaaagtacaatgcactacataaatatggataga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atatagttcaataccacatatattttgcaaagtacaatgcactacataaatatggataga 384

                                                                       
Query: 185 gataaaacagagattgtccctgctttgcataataatcatcagatagaatctatcttagtt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gataaaacagagattgtccctgctttgcataataatcatcagatagaatctatcttagtt 444

                                                                       
Query: 245 ttaatttttaaaacaaacattattgttgtttgttttttatacagggtgtctcactctgta 304
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 445 ttaatttttaaaacaaacattattgttgtttgttttttagacagggtgtctcactctgta 504

                          
Query: 305 gccctgactgtcctg 319
           |||||||||||||||
Sbjct: 505 gccctgactgtcctg 519


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no180_g22.g1 MSMg01no180_g22.g1 CHROMAT_FILE:
MSMg01no180_g22.g1 PHD_FILE: MSMg01no180_g22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:53:40 2005
         (292 letters)



>mm_chr4_138429538_138430229
          Length = 692

 Score =  526 bits (272), Expect = e-154
 Identities = 284/288 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctggtgatctcggggacacaggccagggaaatgtgtatgtatcctttacgcacgtgtggg 60
           |||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||
Sbjct: 336 ctggtgatctcggggacacaggccagggaaatgtgtatgtatccttgacggaggtgtggg 277

                                                                       
Query: 61  gcttatcagtttgatagtcacagagaaggggacgattaattatccttggatgctgtattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 gcttatcagtttgatagtcacagagaaggggacgattaattatccttggatgctgtattt 217

                                                                       
Query: 121 attaattgtctcaccgtgtgaccacatgcctgatatgaagcaacctaaaggagaaaggat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 attaattgtctcaccgtgtgaccacatgcctgatatgaagcaacctaaaggagaaaggat 157

                                                                       
Query: 181 ttattttggtttgagatgctggaatccatcgtggcagggaagcgtggtgggcagctccat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 ttattttggtttgagatgctggaatccatcgtggcagggaagcgtggtgggcagctccat 97

                                                           
Query: 241 tcagatgctggtagtttgccacagagtttgttgcatctcagatgatgg 288
           ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 96  tcagatgctgggagtttgccacagagtttgttgcatctcagatgatgg 49


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)