BAC Information

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BAC

Clone NameMSMg01-180I05
Chromosome4 (Build37)
Map Location 138,498,726 - 138,499,274
singlet/doubletsinglet
Overlap genenone
Upstream geneEce1, LOC100040558, Eif4g3, Hp1bp3, Kif17, Ddost, Pink1, Cda, LOC625638, LOC625646, 0610009K11Rik, Camk2n1, LOC100040618, 4931403E03Rik, Ubxd3, Pla2g2c, Pla2g2f, Pla2g2d, Pla2g5, Pla2g2a, Pla2g2e, Otud3
Downstream geneRnf186, Tmco4, Htr6, LOC665683, Nbl1, 2310028O11Rik, Hspe1-ps4, 9530077C14Rik, Capzb, Pqlc2, LOC100042808, Akr7a5, LOC625977, LOC626000, Mrto4, C230096C10Rik, Zubr1, C79267, Aldh4a1, Tas1r2, Pax7, Gm1667
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-180I05.T7 (MSMg01no180_i05.b1)MSMg01-180I05.TJ (MSMg01no180_i05.g1)
ACCAG373972AG373973
length718743
length of high quality
(start - end)		553 (42 - 594)365 (73 - 437)
definitionCHROMAT_FILE: MSMg01no180_i05.b1 PHD_FILE: MSMg01no180_i05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:53:46 2005CHROMAT_FILE: MSMg01no180_i05.g1 PHD_FILE: MSMg01no180_i05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:53:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCATGTGCTCATACCAGTACTGTATATGGAGAAAAACCAGTTCTTCGCCT
GATTTGCCTGGGACTATAAGAACCTAGCAAGCAGCTTGGGTCCCGAGCTC
TTCTCTACCCCCAGCCCTGGGAAGGGTGAACCTTGCCTGAAAGCTTGCCA
ATAAAGCTGAGCTTGTTTTAAGCTGCCAGCTCCGTGTGATCTGCATCCCT
TGGCTTCTCACCCAGCACTTGGGTTGTGGAAGCAGGAGGATCAGGAGTTC
ACAGCCATCCTGGAACACAGAGACATAGGGGCTAGCCTGGGCTACAGGAC
GTTTTGACTTCCTTCTCACTCACATCTTCCTGCTGTTGATTCTGGGAGCT
CTTAGAGTCCCACACAATCCAAATCTAACCCCAATTCTAGACATTGGTAG
GGGACTTGTGATTAAAGAAGGCCTGGAAATATGTCCCCCTCCTGGCGCCC
TTCTTAGCATCAAAATATAAATGAATAACACAGTGAACTATCACATGTGC
ACAGTAACGTGTGTGTGTGTCGTGCCTCCTCCTCACACTGTGGGTGAGTC
AAGGATGCGTTCTATCCAGGGTGGAGACTTGAACCTGAAGAAGAAAAGCA
TGAATCTCTGTCCTGTTCAGGTGACCGTGAGTGCCCTCCGTAACACCTCT
CTCAAACTTCTGACAATG

TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAATGCCAGCCTTATCTACGTAGAATTCC
AGGTCAGCCAGGGCTACATAGATCCTGTCTAAAAATTAAAAACAAAATTA
TCTGTTTATTCTCAGGACTGGAACGATGACCCGGAGGTTAAGTTGCTCTT
CCAAGGGCCCCTGATTCAATTCCCAGCACCCACATGGTGGCTTAGAACCA
TCCATACCTCCAGGTGTATGAAGTCGCATGACCCAGTCCCATGGCCCCTT
CTTGCTTCTGTGGACCCTGTATATGTGTTGTTCACAGACATACATGCAAA
GGCAAAACATCCTTACACAATAAAATGAAACATTTTAAATGCTTTTCTTC
CCTCACATCGTGTGTGTGTGTGTGTGTGTGATGGGTGTGTTACACCCTAT
TCCCCTTCTTCCTATTCTCCTTTTTCCTATTTCTATTTCTTTACTCTTTT
CTTACCCATATATTCTAACATTACCCATTTTCCTTTTTTCATATATTAAA
TCTATATACCAATTCTTAACTACCTTTACTTCCCCCACTTAATATAACCC
TTCTCCTCTTCCTATACTTGTCCTCCTTTCCCGATCTATTTCCCCCTTTT
TTTTCTCCCCTTCCATTAACCCCCCTTTTTTTTTTACTCTATTTTTATTT
TTTATCCCCTCTTTCATCCCACGTTTTACACCTTCCTCTCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no180_i05.b1 MSMg01no180_i05.b1 CHROMAT_FILE:
MSMg01no180_i05.b1 PHD_FILE: MSMg01no180_i05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:53:46 2005
         (553 letters)



>mm_chr4_138498522_138499474
          Length = 953

 Score = 1046 bits (541), Expect = 0.0
 Identities = 547/549 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccatgtgctcataccagtactgtatatggagaaaaaccagttcttcgcctgattt 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccatgtgctcaaaccagtactgtatatggagaaaaaccagttcttcgcctgattt 264

                                                                       
Query: 65  gcctgggactataagaacctagcaagcagcttgggtcccgagctcttctctacccccagc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gcctgggactataagaacctagcaagcagcttgggtcccgagctcttctctacccccagc 324

                                                                       
Query: 125 cctgggaagggtgaaccttgcctgaaagcttgccaataaagctgagcttgttttaagctg 184
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cctgggaagggtgaacctcgcctgaaagcttgccaataaagctgagcttgttttaagctg 384

                                                                       
Query: 185 ccagctccgtgtgatctgcatcccttggcttctcacccagcacttgggttgtggaagcag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ccagctccgtgtgatctgcatcccttggcttctcacccagcacttgggttgtggaagcag 444

                                                                       
Query: 245 gaggatcaggagttcacagccatcctggaacacagagacataggggctagcctgggctac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gaggatcaggagttcacagccatcctggaacacagagacataggggctagcctgggctac 504

                                                                       
Query: 305 aggacgttttgacttccttctcactcacatcttcctgctgttgattctgggagctcttag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aggacgttttgacttccttctcactcacatcttcctgctgttgattctgggagctcttag 564

                                                                       
Query: 365 agtcccacacaatccaaatctaaccccaattctagacattggtaggggacttgtgattaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agtcccacacaatccaaatctaaccccaattctagacattggtaggggacttgtgattaa 624

                                                                       
Query: 425 agaaggcctggaaatatgtccccctcctggcgcccttcttagcatcaaaatataaatgaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 agaaggcctggaaatatgtccccctcctggcgcccttcttagcatcaaaatataaatgaa 684

                                                                       
Query: 485 taacacagtgaactatcacatgtgcacagtaacgtgtgtgtgtgtcgtgcctcctcctca 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 taacacagtgaactatcacatgtgcacagtaacgtgtgtgtgtgtcgtgcctcctcctca 744

                    
Query: 545 cactgtggg 553
           |||||||||
Sbjct: 745 cactgtggg 753


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 953
Length adjustment: 10
Effective length of query: 543
Effective length of database: 943
Effective search space:   512049
Effective search space used:   512049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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