BAC Information

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BAC

Clone NameMSMg01-180P10
Chromosome4 (Build37)
Map Location 143,012,955 - 143,013,288
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC546484, 6330411D24Rik, Prdm2, LOC666018, EG626575, LOC433776, Pdpn, Lrrc38, LOC621961, Pramel1, 4732496O08Rik
Downstream geneOog4, LOC666015, LOC626700, OTTMUSG00000010207, LOC100040854, LOC100040861, BC080695, LOC666049, LOC279185, LOC277668, LOC100040924, OTTMUSG00000010333, LOC277666, OTTMUSG00000010009, OTTMUSG00000010328, OTTMUSG00000010433, LOC195555, LOC194224, LOC626889, LOC329984, LOC626922, LOC626943, LOC100041127, LOC436146, Pramel4, LOC100041077, LOC100041144, Oog3, Oog2, C87977, Pramel5, LOC666150, LOC626995, OTTMUSG00000010537, EG627009, Pramef12, D530049N12Rik, 1700012P22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-180P10.T7 (MSMg01no180_p10.b1)MSMg01-180P10.TJ (MSMg01no180_p10.g1)
ACCAG374288AG374289
length732728
length of high quality
(start - end)		694 (39 - 732)334 (69 - 402)
definitionCHROMAT_FILE: MSMg01no180_p10.b1 PHD_FILE: MSMg01no180_p10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:54:19 2005CHROMAT_FILE: MSMg01no180_p10.g1 PHD_FILE: MSMg01no180_p10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:54:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCC
TCTGTCTATTCAATCTCCTACCACCTTCAGCAGACCTGTGGATCACAAAC
TATACAGGTAAGCATCCATTCCCTCTCATGCCTTCCTTGTTCACCTAGTC
TTTTGGGGAAAGTCAAGCTACCTTGGGCAGCCTGCTATCCCAGAGGACCC
CAATTCTCTTGCCACCTCTACTTCCACCTTAAACAGACTTGTAGATCCTG
AACTATACGTATAAGCCACTCATCTTCTCCACTTGATGGAGTTCTCTGCG
ACAAGTTAAGCTGCCATGAGCAGAGTTCTATCCCAAAGGAACCTACATTC
TCTAGTGACCTCAAAGATGCTCATCCATGGCACAAAAACACTTGTTCAAC
TATGCTCATAGAAGCTTTCTGTTAATAGCCCCAAACGGGAAACAACCAGA
GATGGTCACAGATGAAGACTGGTAAAGTAAATGGGTTACATCTCCACAAT
GGAATATTATTAAAATCAAAGACAGTATAAATTGTGCAGGCAAATGAATG
GAATAGGAGAATATCATGCTGAGTAAGATGATAAATCCAGAAAGGACATG
CATGGTATATCCTCACTAATAAGTGGATATTAGCCTCAAAATACAGGATA
CCCATGAAGACACAATGAAGCTAACCAGAAGGAAGGACAAGTGAGAATGC
TTGAATATCACATAGAAGGAAGATATAATAAT

AGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTGCATATGTGAATCTTGCTTACCTGGGATGA
ATCTTCTGGGTTAGCAGCCCATCCAGCACACCCTCAAAAGGCTGCAGGTG
GGCCATCTCCATTAAAGATTCCACACTGAGGCCAGCTTGCCACCATTGCC
CTCAGGAGGGTAGGTGATTTGCCTGTGAATGCATCCGTGGACAGTGGTGG
GAATTGCTTCATGGGCAGGTCCTCCAGAGCAGCGAGGGCCAAGGCTTCAT
GCCTTAGGGGCATGTGCATTGCCAGCTCCAGCAGTGTGGCTGTGGTCTGG
AGGCTCATCGTTGTGGATCTTCAGTCTGCAGGCCTCTTGGGAAGCATCCA
GGCCCCACTACGCTTTTAGACAGAGGCATAAGAAGCCCGTCTCCCTCATC
ACAGGACTCAAGTCAGAGCCAGAGTCACTACTCTTCTAAGGATGGAAACC
TCAGATTTCCCCCATCGTGCTCACCATGTATTATGCTTGAAGCCAAACTG
CCTTTACTAGCAGCATGGGGGAGCTTTCATAAGCATTCAAGCGAACACAA
AGATCACCGTGCGCTCCACACCGCTGATATTATTACCCCTATCCCCCTGA
ACTATGAACCCCCCCCAAATCGCTTCGGGCAAACTCCCGTCTTATTACCT
TTGTCACTTGTCTGATTCCGCACTCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no180_p10.g1 MSMg01no180_p10.g1 CHROMAT_FILE:
MSMg01no180_p10.g1 PHD_FILE: MSMg01no180_p10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:20 2005
         (334 letters)



>mm_chr4_143012755_143013488
          Length = 734

 Score =  630 bits (326), Expect = 0.0
 Identities = 332/334 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgcatatgtgaatcttgcttacctgggatgaatcttctgggttagcagcccatccagca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 201 ctgcatatgtgaatcttgcttacctgggatgaatcttctgggttagcagcccacccagca 260

                                                                       
Query: 61  caccctcaaaaggctgcaggtgggccatctccattaaagattccacactgaggccagctt 120
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 261 caccctcaaaaggctgcaggtgggccatctccattaaagactccacactgaggccagctt 320

                                                                       
Query: 121 gccaccattgccctcaggagggtaggtgatttgcctgtgaatgcatccgtggacagtggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gccaccattgccctcaggagggtaggtgatttgcctgtgaatgcatccgtggacagtggt 380

                                                                       
Query: 181 gggaattgcttcatgggcaggtcctccagagcagcgagggccaaggcttcatgccttagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggaattgcttcatgggcaggtcctccagagcagcgagggccaaggcttcatgccttagg 440

                                                                       
Query: 241 ggcatgtgcattgccagctccagcagtgtggctgtggtctggaggctcatcgttgtggat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggcatgtgcattgccagctccagcagtgtggctgtggtctggaggctcatcgttgtggat 500

                                             
Query: 301 cttcagtctgcaggcctcttgggaagcatccagg 334
           ||||||||||||||||||||||||||||||||||
Sbjct: 501 cttcagtctgcaggcctcttgggaagcatccagg 534


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 334
Length of database: 734
Length adjustment: 9
Effective length of query: 325
Effective length of database: 725
Effective search space:   235625
Effective search space used:   235625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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