Query= MSMg01no181_c05.b1 MSMg01no181_c05.b1 CHROMAT_FILE:
MSMg01no181_c05.b1 PHD_FILE: MSMg01no181_c05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:33 2005
(520 letters)
>mm_chr4_130453339_130454258
Length = 920
Score = 944 bits (488), Expect = 0.0
Identities = 509/516 (98%)
Strand = Plus / Plus
Query: 5 gaattcctgcctcctgctgtagctgttaatttatgttaatcagatgcttgaaaccccaag 64
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctgtctcctgctgtagctgttaatttatgttaatcagatgcttgaaaccccaag 264
Query: 65 tcccctggatacctgggtctagggaggatggagctggctggagagaggatgaagtggcct 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcccctggatacctgggtctagggaggatggagctggctggagagaggatgaagtggcct 324
Query: 125 tgtgtttctgaggtggctctgctggcctttacctgggccccacagcatgggttctgtttc 184
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgtgtttctgaggtggctctgttggcctttacctgggccccacagcatgggttctgtttc 384
Query: 185 ccatgaaccttagctgtgtgaggccatgagaggggggctctttcctggtgcccagatact 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ccatgaaccttagctgtgtgaggccatgagaggggggctctttcctggtgcccagatact 444
Query: 245 gaggaagagtgaggggctgctctgttgtctggtaggaaaggtgaccagctaaaagccagg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 445 gaggaagagtgaggggctgctctgttgtctggtaggaaaggtgaccagctaaaggccagg 504
Query: 305 tcataagtcatgggccctcatgagtccacagactttcctccctggacacctcaggggcac 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tcataagtcatgggccctcatgagtccacagactttcctccctggacacctcaggggcac 564
Query: 365 agaaaacaacaggaagcccttgtgggcagcttccatgacaggtagctggggctcagcgcc 424
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agaaaagaaaaggaagcccttgtgggcagcttccatgacaggtagctggggctcagcgcc 624
Query: 425 tgcacttgcctcttagctgctggggaacaaagtgtcttaacctctgtgcctcaatctcct 484
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 625 tgcacttgcctcttagctgctggggaacaaagtgtcttaacctctgtgcctcagtctcct 684
Query: 485 cacaggaactggggacactgagtgcttcctgccaca 520
||||||||||||||||||| ||||||||||||||||
Sbjct: 685 cacaggaactggggacactaagtgcttcctgccaca 720
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 920
Length adjustment: 10
Effective length of query: 510
Effective length of database: 910
Effective search space: 464100
Effective search space used: 464100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no181_c05.g1 MSMg01no181_c05.g1 CHROMAT_FILE:
MSMg01no181_c05.g1 PHD_FILE: MSMg01no181_c05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:33 2005
(580 letters)
>mm_chr4_130587648_130588628
Length = 981
Score = 971 bits (502), Expect = 0.0
Identities = 551/570 (96%), Gaps = 7/570 (1%)
Strand = Plus / Minus
Query: 1 caacattcgctgagaaggtctgggtctaacttggagccatgtcatagagggaccta---t 57
||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 566 caacatttgctgagaaggtctgggtctaacttggagccatgtcatagagggac--aggtt 509
Query: 58 gggaggcctatgggaggaatagcaaggaggaaggaccctagtggtccctggggaccagcc 117
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 ggaaggcctatgggaggaatagcaaggaggaaggaccctagtggtccctggggaccagcc 449
Query: 118 agtgttcacagctgcagacaaccccacactaccgcccacagcagcctgaggggctctttc 177
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 agtgtgcacagcagcagacaaccccacactaccgcccacagcagcctgaggggctctttc 389
Query: 178 agagacatccactcatccactcgactgaagccagacccttgactctgccgcaggaggggg 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 agagacatccactcatccactcgactgaagccagacccttgactctgccgcaggaggggg 329
Query: 238 tttcagaaagagccagcatgaatcagcactggggcttattaaaagaagatactctgacat 297
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 328 tttcagaaagagccagcatgaatcagcactggggcttattaaaagaagaaactctgacat 269
Query: 298 aaatttaaccacagtctcgacagagaggtgccccgaagaaaagctaggctgtagtggaga 357
|||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 268 aaatttaaccgcagtctcgacagagaggtgccctgaagaaaagctaggctgtagtggagc 209
Query: 358 gagcccctctgcctcacaggccattgttatgccttccctcatgtgacagatgccctggtt 417
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 208 gagcccctctgcctcacaggccattgttatgccttccctcatgtgaaagatgccctggtt 149
Query: 418 gccaataaacacttccttttttcttgagtcgttttggtcaagcattttgtcacagcaatg 477
|||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 148 gccaataaacccttccttctttcttgagtcgttttggtcaagcattttgtcacagcaa-- 91
Query: 478 agaaaaatatctaacacacctgttttctttctcctccacttcttttaaaaatgtatctgt 537
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90 agaaaaatatccaacacacctgttttctttctcctccacttcttttaaaaatgtatctgt 31
Query: 538 ggttcccagtcacccaaatagagttcgatg 567
||||||||||||||||||||||||||||||
Sbjct: 30 ggttcccagtcacccaaatagagttcgatg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 981
Length adjustment: 10
Effective length of query: 570
Effective length of database: 971
Effective search space: 553470
Effective search space used: 553470
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
